Mdei014020.1
Basic Information
- Insect
- Morpho deidamia
- Gene Symbol
- -
- Assembly
- GCA_029101505.1
- Location
- JAPJRL010000016.1:7028659-7043132[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.033 2.7 9.3 0.2 3 23 147 167 145 167 0.96 2 13 0.002 0.16 13.2 2.8 1 23 278 300 278 300 0.99 3 13 7e-05 0.0057 17.7 0.6 1 23 306 329 306 329 0.96 4 13 0.035 2.8 9.2 4.7 1 23 334 357 334 357 0.94 5 13 2.4e-07 1.9e-05 25.5 1.4 2 23 510 531 509 531 0.98 6 13 0.00048 0.039 15.1 2.3 1 23 537 559 537 559 0.98 7 13 0.0014 0.12 13.6 1.8 1 23 682 704 682 704 0.95 8 13 0.0011 0.089 13.9 1.5 1 23 710 732 710 732 0.94 9 13 0.00059 0.048 14.8 2.1 1 23 741 763 741 763 0.98 10 13 0.00014 0.011 16.8 0.6 2 23 810 831 810 831 0.97 11 13 0.062 5 8.4 5.5 1 23 848 870 848 870 0.95 12 13 1.6e-06 0.00013 22.9 0.5 1 23 876 898 876 898 0.98 13 13 5.8e-07 4.7e-05 24.3 3.1 1 23 904 927 904 927 0.98
Sequence Information
- Coding Sequence
- atgaatgaaaacaTGGGGCCAGATGTTGATCCTCTAAGTACATACAGCTTACACAATTATACTAGTTTAGAAAATTTTGGAAGTGGACTACTTCCATTTAGCAGTAACCTAGGACAATATTCATTTCCGGTTAAAGTAGAAAATTACCAAAATTCAACTTATTTTAACTTATCACAGTCTATTCCTTCAAAATATACCACACAACAGACacataatgaaaataatgatttaaGAAATGAGACAACAGACAGTTGTGTAAAGCAAACACAAGCAACAAATTCAAATCACAGTAATGAGAATATGaataacaatataacaaaacaagaGGAAGATATCAAACCAGAAATAACAGAAAATGGtccaaaaagaaaaataaagaaggagagaagtaaatatttttcagaaaaaataacagaaaaagATTTTCCATTCTATGGGTGCTCAGTGtgtaatatatcttttaaagaaTTACAACAATTAGATACACATGTAACAATCCATAAGGATAGAATTACAAGCTATGATTTgagaataaaaaatcaaatcaagaAAAAGAAGATGAGGAGGGAAATGAAGAAgagtaaaaaattgaaaaagaatgTCAAGAAAGAACCAGACTTAGATGTTGAAATTAAACCAGAGGATGGTTACATTGGTAATGAGAAAGCAtctgattttattaataatatagaatCTGATAATCAGAgctctaaagaaaataatggaaTTCAAAACACAAATGGTAGTAAAGAAGCAAATTCAGCTGAACCCAATGGATCGTTAACACAAGCAATATCCAAGAAGCAACAGGTGCTAAACCTGCAGAAGATATACAAATGTTTTGCATGTCAAAAACAGTTTACTCTCAGTTATTATTTGAAGCTCCATGTTAGATCACACACAGATGAGAAGCCATATACGTGTGCAGAATGTGGCCAGTCATTCATAACAGCTAGCAAGTTGGGTCGTCACAATAAGAGGTTCCATCTAGCGATCAGATATCAATGCAGAATATGCTACAGATACTTTTCTAGGTTTGAATTTTTGACGCGGCATTTTGATAAAAAGCACCCCGATGACAAATTGGAAGGAGAACCATACGATTACAACGCAATATTGccatatttaaaagaattagaAGAGCAACTGAGAGAAAAAGAAGAGAAGGAGAAGGCGGTTTCAAAACCGGACGATCCATGGTCTAACGACTGGGATAACACTGAAGACAAGAGTGATAACGAGGAACTCAAAGACGAAGTCAAAAGTGAGAATGAAGAAGTCAAACCACCTGAGGCTATAGAAGAAGTGAAAGTGGATATGAGTGATGTGCAAGTGAAAGTGGAGTCGGAGGCGATACAGGAAGAGGAAGATGCACTGGATAAAGACATTGGCGATATAAAAGATGAAGACAGTGTAAAAGATGAAAAttattCAGATGATGATTATTTTCCATCAAATACATGGGCTTCGTCCCCAAATATCGTAGAGCCCTCGTCCCCTAAAAAGTTGAAGTCAGAAGATCGTGTCAAATGTCCTGTCTGCCAGAAGAAATTCAGCACATCTTCCTACATGAAGATCCATATGAGAACTCATACAGGGGAGAAACcgtttaaatgttatatatgcAACATAGGATTTATTACTTCAAGTAAAATGCACCGGCATGTCCTAACACATCCAGAGTCTTGGGCTGATGACGTGCTCAAAGAAGAAAAGGTAGAAGACGGTGTGGGGATGAAGGTCGAATATGGTAAAGAAGGAGAAGAGGACAAAAAGGCTAAGAAAAAGTTACGGATGAAAAAAGCGCTCGCGAAGTTCTCCAAGAAGTCGCGGCCGCTGGAGAAGAAGAAGAGGATGTACCAGAAGAGGCCGCATTCCTGTGAGTTCTGCCAGAAGCGGTTCCTGCATCTGGAAACCTTGCAGGTTCATAAAAAGTGTCACGAGGGCGAAAGTATAGTTTATAAATGTAACTTTTGCCTCGTGGAGCACCCAGATGAGGCCGCGCAGAAGGCCCACGAGGCCTCGCACCAGGGACCGAAGCCCTACCTCTGCACTATCTGCGGCAGGAGCTATAAAAAACGAGAGACGATGATATATCACCGCAAGAACCACAAACCGGACCGCTCGTACATCTGCGACGTGTGCACCAAGAGCTTCAACGCGCAGTGTAAGCTGCAGCGGCACCTGGTGGGGCACCGCGCCGCGCGCTTCGTGCTGCGCTACGAATGCCCCGTGTGCGCGCACATGTTCAACACCAAGTACCACGTGCAGATGCACCTGGCCACGCACCAGAAGGAGGGCCTAATACAGGAGGAAAATCGCAGCGAGATCCTAGCAATGGTCCTGCAGAACGCCAGGAAGATACCGAAAACAACTGACGCGCCGGTCATGCTCACCAATATCGTACCGTCAGACGAGCGAAGCAGGGTCTGCAACATATGCGGTGAGGTGTTCCAACACTTCTATTACCTAGAGGAACATTTAAAGAGCCACGGCTCGAAGATAGCGATAGAAGACAGCGAGAAAGCGGAAGAGAAGAAACATATATGTACGGTCTGCAACAAGGGTTTCAAATTGCATTACTATTTGAAACTACACAGCTTCACGCACACAAAGGAGAAGCCGTTCATCTGCCAGCAGTGCGGCAAGGGGTTCATAACTCGTGGGAAGTTAAAGAGACATATAGAAACTCATACGGGTCTCAAGAAATACCAGTGTCACATATGCTATAAGTTCTTCACGCGGCCCAGTTATTTGAGGATCCATGTGAGGACTATACACGGGACCCAGGACTATAACTTTAGAATCGATAAGCCATGGAATCAGTTTAACGGCGAGTTCCCATCATAA
- Protein Sequence
- MNENMGPDVDPLSTYSLHNYTSLENFGSGLLPFSSNLGQYSFPVKVENYQNSTYFNLSQSIPSKYTTQQTHNENNDLRNETTDSCVKQTQATNSNHSNENMNNNITKQEEDIKPEITENGPKRKIKKERSKYFSEKITEKDFPFYGCSVCNISFKELQQLDTHVTIHKDRITSYDLRIKNQIKKKKMRREMKKSKKLKKNVKKEPDLDVEIKPEDGYIGNEKASDFINNIESDNQSSKENNGIQNTNGSKEANSAEPNGSLTQAISKKQQVLNLQKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAECGQSFITASKLGRHNKRFHLAIRYQCRICYRYFSRFEFLTRHFDKKHPDDKLEGEPYDYNAILPYLKELEEQLREKEEKEKAVSKPDDPWSNDWDNTEDKSDNEELKDEVKSENEEVKPPEAIEEVKVDMSDVQVKVESEAIQEEEDALDKDIGDIKDEDSVKDENYSDDDYFPSNTWASSPNIVEPSSPKKLKSEDRVKCPVCQKKFSTSSYMKIHMRTHTGEKPFKCYICNIGFITSSKMHRHVLTHPESWADDVLKEEKVEDGVGMKVEYGKEGEEDKKAKKKLRMKKALAKFSKKSRPLEKKKRMYQKRPHSCEFCQKRFLHLETLQVHKKCHEGESIVYKCNFCLVEHPDEAAQKAHEASHQGPKPYLCTICGRSYKKRETMIYHRKNHKPDRSYICDVCTKSFNAQCKLQRHLVGHRAARFVLRYECPVCAHMFNTKYHVQMHLATHQKEGLIQEENRSEILAMVLQNARKIPKTTDAPVMLTNIVPSDERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIEDSEKAEEKKHICTVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHIETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRIDKPWNQFNGEFPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -