Mdei003802.1
Basic Information
- Insect
- Morpho deidamia
- Gene Symbol
- -
- Assembly
- GCA_029101505.1
- Location
- JAPJRL010000005.1:579676-582066[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.012 0.97 10.7 6.2 1 23 286 308 286 308 0.98 2 16 1.6e-05 0.0013 19.7 3.4 2 23 314 335 313 335 0.97 3 16 0.0017 0.14 13.3 6.4 1 23 368 390 368 390 0.99 4 16 0.0038 0.31 12.3 3.9 1 23 396 418 396 418 0.97 5 16 0.0033 0.27 12.4 1.5 1 23 424 446 424 446 0.98 6 16 0.13 10 7.5 9.1 1 23 452 474 452 474 0.92 7 16 1.3e-05 0.0011 20.0 1.2 1 20 480 499 480 502 0.95 8 16 2.3e-06 0.00018 22.4 1.4 1 23 508 530 508 530 0.98 9 16 0.00063 0.051 14.7 4.4 1 23 536 558 536 558 0.98 10 16 1.8e-05 0.0014 19.6 2.3 2 23 565 586 564 586 0.97 11 16 0.24 19 6.6 9.2 1 23 592 614 592 614 0.98 12 16 4.7e-05 0.0038 18.3 2.3 1 23 620 642 620 642 0.98 13 16 2.1e-06 0.00017 22.5 5.6 1 23 648 670 648 670 0.98 14 16 2.7e-05 0.0022 19.0 1.7 1 23 676 698 676 698 0.98 15 16 0.00019 0.016 16.3 4.1 1 23 704 726 704 726 0.98 16 16 0.0046 0.37 12.0 3.3 1 23 732 754 732 754 0.97
Sequence Information
- Coding Sequence
- ATGGATTCTGACCACCCAGATCCAAATGCTCAGGAGGATGTGTATACAGTTTCAGTTATTAAAGAGGAAATAACTGTAGAATTCGAAAATATGTATGATAATGTTATGGTGAAGATTGAACATTGTGTAGCACCTGATAATGTAGCTGATATCAAAGAAGAAGCATATGATAATACAGATAACTccgaatttatacaaaatagacATTCGTTAGACAAAAAATACTTGGAAGCAAACATGCTTAACGAAGTCAAAGCTGTTACTGCGATTGCTGATTCTGACTTATTAGATGTAAAAGACGAAGCGCATGATCCGCAATACAATAAACAGATGCTGGAATGCGTGGAGGACTTCAGCAAGTTTGTGGGTCAGAACGAGCGGGTAGAATATCCTACGCAACGATCACAGGTGGGGGTAAAATTGAGGAAACGCTTATTGGGACCGCCAAAGAATTATGCCAACAAAGATGTACGGATAGCGGCTGACGGACAGAGGAAGAAGCGCGCAAGAGAGACTAATGATGAACGGGAAGAGATGTGGAGGGATGGTGAAAGGAAACGGGTGAAAATAGAGATGGAGCCGCGAAAACGTGCTGATAAGATAATGACGCGGTCAAGACGGGAGCAGAAGCCTGTAAGGCTCCAGAGGAAGGCGGAGGCTGGGCGgcgaagaaagaaagaaactgaTGAACAGAAATCTGCTAGTTTAAAGTGGGAAGCTAACGAAATTGAAGCTATAGACAAGCAAAGTGTTTCAatagctaaaaaagcaaatagaTCCGTCAAATTGTGTGAATTGGAATCCGTAATATATACCAGTCAAAAGCTAACAACAGATCTGATTGGTTTAGTACGTTTCTCTTGCGATAGTTGCAAATATAAATGTGCTAAGAAGtgtttattaattagacacatgaggaTTCATAGTCAGAAACTATTGTCTTGCGACATTTGCAATCATAAATATCGTTACAAATACAATTTAGTCAAGCACATGAGGAGTCATAACGGAAAGCCCTACGCCTGCAAACTATGCAGTTACAAGAGCGCTTGCAAACAAAATATAGCCAGCCATATCAAGAACCATTACGGTGCGAAGCCATTCAAATGCCATCTCTGTGATTACAAGTGTTCATTTGAAACCGAGTTGAATGCTCATAAAAGAACACACATTGAAGAGTATCCTTTCGCTTGCAACCGTTGCAGCTATAGATCTAACAGGAAATTCCTTTTTACCAGTCATATGAGGACTCACAGTGGAGACAAGCCTTTTGTCTGCGATCTTTGCAATTACAAATGTCAGGCCAAAGGCGCTTTGAATAGCCATATGAGAAATCATACCGGCGAGCAGCCGTTCTCATGCGATCATTGCAGTTACAAATGCAAACAGAAAATCCATTTAATTCACCACATGTGGACTCATTCCGGCGAGAAACCCTACCCCTGTCATGTTTGTGATGCGAAATTCACAAGGAAATACAATCTAATAAGTCACATGTGGAATCATAATGGAGAGAAACCGTTCTCTTGCAATATTTGTGATGCGAAATTtactacaaaatataatttggtCAATCACGTAAAGAAACACTCTGGCGAGAAGCCGTTCTCATGCGATCTTTGCCAGGCGAAATTCACTAAAAGGGACCATTTGATCCGCCATTTTAAGAGGCACTCTCCTGAAAAGCCGCTTTCGTGCGAGATTTGTGATTACAAATGTACGGTCAGAGATAATTTAAAGTCGCATATGAGGAGTCATTCGAGTAAGAAACCGTTTTCCTGTGAATTTTGCAACTATAAATGTTCAAAAAAGTCAAATCTAAACTGTCACAGGCAGACCCACTCTGGTGAGAGACCGTTCTCTTGCAATCTCTGTGATGCGAAATTCACTAGAAAATATTACTTGTTAACTCACGAAAAGACTCACAGTGGAGAGAGACCGTTCTCTTGCAATATTTGCAATGCGAAATTCACAAGGCAGCATCATTTGATACGCCATATGAGAAATCACTCTGCTGAGAAGCCGTTTTCGTGCGAATTCTGTGATTATAAATCTACAGTTAAAGACAACTTGAAGTCACATATTAGAACTCATACCGGCGAGAAAGCATTCTCCTGCGATCTTTGTCCATATAAATGTTCCAAGAAGTCATATCTAAATAAACACTTAAAAATTCATACTGTTGATAACACATTCTGTTGTGATCGTTGCGATTTTAAATGTAGCGATAATGAGGGTTTGATAGTTCATATCAAATCACATACTGatgaattttgttttgttaaatgTGAACCCTTTGGTCAGAGCGAAacatag
- Protein Sequence
- MDSDHPDPNAQEDVYTVSVIKEEITVEFENMYDNVMVKIEHCVAPDNVADIKEEAYDNTDNSEFIQNRHSLDKKYLEANMLNEVKAVTAIADSDLLDVKDEAHDPQYNKQMLECVEDFSKFVGQNERVEYPTQRSQVGVKLRKRLLGPPKNYANKDVRIAADGQRKKRARETNDEREEMWRDGERKRVKIEMEPRKRADKIMTRSRREQKPVRLQRKAEAGRRRKKETDEQKSASLKWEANEIEAIDKQSVSIAKKANRSVKLCELESVIYTSQKLTTDLIGLVRFSCDSCKYKCAKKCLLIRHMRIHSQKLLSCDICNHKYRYKYNLVKHMRSHNGKPYACKLCSYKSACKQNIASHIKNHYGAKPFKCHLCDYKCSFETELNAHKRTHIEEYPFACNRCSYRSNRKFLFTSHMRTHSGDKPFVCDLCNYKCQAKGALNSHMRNHTGEQPFSCDHCSYKCKQKIHLIHHMWTHSGEKPYPCHVCDAKFTRKYNLISHMWNHNGEKPFSCNICDAKFTTKYNLVNHVKKHSGEKPFSCDLCQAKFTKRDHLIRHFKRHSPEKPLSCEICDYKCTVRDNLKSHMRSHSSKKPFSCEFCNYKCSKKSNLNCHRQTHSGERPFSCNLCDAKFTRKYYLLTHEKTHSGERPFSCNICNAKFTRQHHLIRHMRNHSAEKPFSCEFCDYKSTVKDNLKSHIRTHTGEKAFSCDLCPYKCSKKSYLNKHLKIHTVDNTFCCDRCDFKCSDNEGLIVHIKSHTDEFCFVKCEPFGQSET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -