Mdei013380.1
Basic Information
- Insect
- Morpho deidamia
- Gene Symbol
- -
- Assembly
- GCA_029101505.1
- Location
- JAPJRL010000016.1:2683899-2687778[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.4 1.1e+02 4.2 1.1 1 23 83 106 83 106 0.94 2 19 0.4 32 5.9 0.1 2 23 131 153 130 153 0.95 3 19 0.0045 0.36 12.0 6.4 1 23 175 197 175 197 0.98 4 19 0.00046 0.037 15.1 0.0 1 23 201 223 201 223 0.98 5 19 0.0003 0.025 15.7 1.1 1 23 228 251 228 251 0.97 6 19 0.84 68 4.9 1.9 2 23 259 281 259 281 0.92 7 19 2.5e-06 0.0002 22.3 2.6 2 23 289 311 288 311 0.96 8 19 0.00015 0.012 16.7 1.3 1 23 317 339 317 339 0.97 9 19 1.1e-07 9e-06 26.5 2.8 1 23 345 367 345 367 0.98 10 19 0.0018 0.15 13.3 0.3 1 23 472 495 472 495 0.94 11 19 0.00053 0.043 15.0 0.1 2 23 522 544 521 544 0.96 12 19 0.13 10 7.5 3.7 2 23 567 588 566 588 0.97 13 19 0.037 3 9.2 1.2 1 23 592 614 592 614 0.91 14 19 0.0021 0.17 13.1 2.5 1 23 619 642 619 642 0.98 15 19 0.14 11 7.4 0.6 2 23 650 672 649 672 0.96 16 19 7.1e-05 0.0058 17.7 5.5 2 23 680 701 679 702 0.95 17 19 0.00035 0.028 15.5 0.4 1 23 708 730 708 730 0.98 18 19 4.9e-05 0.0039 18.2 3.3 1 23 736 758 736 758 0.99 19 19 2.1e-05 0.0017 19.3 1.3 1 23 764 787 764 787 0.95
Sequence Information
- Coding Sequence
- atggggCAAGGGGTGAGTCTCCATCAGCAAATAACCATCCTAACTGGAGCCAAAGCGGACGAAATCCTTCACAATATTCAAGAATCAAGTGGAAAAACTCGCAAAGTACAAGGTTGTAAGAAAAAGAATCTTAAGAGGAGTCTAGATGAGATATGTGTCCAAGAAGTCGAGAAGCATCGTAAAAACTTGCTAGAGATATTGGTAAACTCTAATGCCACACCAATACGGGATCGTGGTGATCTTGGGTACTCTTGCTGCTTTTGTAATGACCAGTATCCAGTAGCAGCTGACCTCAAGAAGCATACGGTAAAAGATCACGATGTTGATGCCTTGAAATCAGTTATTCAAGACATGAGAATTTATACTGTTAAATTAGATGTAACAGCCTTGAAATGTACGATTTGTTCCATAAACATATCAACAATAGAACTACTGGTGGAACATTTGATTAAAACTCACAAACGGACTATTTATACGGATATCAAAAATCATATGATACCTTTCAAATTTGAAGATGATGAACATAAATGTGCAATGTGCTCCACAAAATGCTCGACGTTTAGAAATCTCACCGAGCACATGAACACGCATTATAGAAATTATGTCTGTGAAGACTGTGGTGCCGGATTCATTAATCGTGACATATTAAGGAGCCACGTAAGGATACATAGAACGGGGACATTCACATGTGAATTCTGttcaaaaacttttaatacTCGTGTCAAAATGCTGTCGCATATAAACGTTGTGCACAAACATCTGTACATGACGAGAAAATGCGGGTACTGCAACGAAATGTTTGTATACGACCACAAGAAAAACGAACATTTGACAAAAGTACACGGCGCAAAGCTTCAAGAGCTTAAATGTGAAATATGTGACAAGATATTTATCAACCACACCAATTTGAGAAGGCACACGAGAAAAGACCATTTGATGGAGAGGAACTTTGAATGTGATATGTGTGATATGAAATTCTTCGGCCGGAAAGATTTGCGAAAGCATATGGTGAGACATACCGGCCAACGTGATTTTCACTGTGATATATGCGGGAAGGCGTTCACCAGAAAATTCACACTTAACCAACACATGAGGGTACATGTCAAAGAACGGCGAAGAGCTAGCAGCGAGTCGAAGGACAGATATTTGATTATAATGGAGTCAGATGTAGAAGCCGgtAAACACTCCCATACAGAATATAATGAAGATGCAGGGGAAATTAAAGTCTCTGAAATGCAATCACTTAGTAATGAtgttgaaaattataatatagataataagaaagAGAGAATCAAATCAGacaaaaagattaaattaaaaccGATCAAAGAACTGTCTAAgcatcataataatataaaagaggtACTTCAAGGGTCAAATGCAACACCTATACATGGTCGAAGTGATATAGGTTACTTGTGTTGTTATTGCAACGAACAATATGCAGATCCTGCTGATTTAAAGGCGCACACGTTAGTTAACCACGAAAACAATTCAAATGCTACATTTCTTCGGaaaagagatttaaaaaaatatcatgttAAAGTCGACATTACaggattaaaatgtaaaatatgcgATCAGAGTATAGAGAATTTGGACCAGTTGATAAATCActtgaaaatcgatcacaacagaaaaatatatacagatgTCAAGAATCATATAGTGCCGTTCAAATTTGATAGTAACGAATTAAAATGCTTTTTGTGTTCGACCGTGTATACTAAATTTAAGATGCTTTTAGAACATATGCACAAGCATTGCAGGAATTTCGTATGCACTCTATGCGGCAACGGATTTTTCAATCGACGATCGCTGCTGAACCACGATAAGCGTCATAATTTGGGAGAGTTCAAATGCGAACATTGCGAAAAAGTGTTTGATAACATCCAAAAGAAAAATTCACATGTTCGTACAGTGCACGTACATGGTTACCTATTGAACAAATGTGGTTATTGCAATCAAAAATTTCCCGGATACAGGACAAAGGCGGAGCACTTAAAGACCGTACATGGTATCGGTGTAGAACCGGTTAAATGTCAAGCTTGTGAAAAGAGTTTTTGTAACAGTGACTCTTTGAGGAAACATATAAAGCGTCATCATCTAATGGAGGGCCGGTACAGCTGCTCCGAGTGCGATATGAAGTTCTATGGCAATAAAGATTTAGTGGAACACATGGTGAAACATACTAAGACACGTTGCTTCCAGTGCAAAGTTTGCTTGAAACGGTATGGGAGACAACACACGTTGCGCGAACATATGCGGATTCATGATAACGATAGGCGTTTCAAGTGCGACATTTGCGGAATGGCTTTCGTACAAAAGTGCAGTTGGCGACGCCATATGCTCGCTAAGCATGGAgagcaaaaataa
- Protein Sequence
- MGQGVSLHQQITILTGAKADEILHNIQESSGKTRKVQGCKKKNLKRSLDEICVQEVEKHRKNLLEILVNSNATPIRDRGDLGYSCCFCNDQYPVAADLKKHTVKDHDVDALKSVIQDMRIYTVKLDVTALKCTICSINISTIELLVEHLIKTHKRTIYTDIKNHMIPFKFEDDEHKCAMCSTKCSTFRNLTEHMNTHYRNYVCEDCGAGFINRDILRSHVRIHRTGTFTCEFCSKTFNTRVKMLSHINVVHKHLYMTRKCGYCNEMFVYDHKKNEHLTKVHGAKLQELKCEICDKIFINHTNLRRHTRKDHLMERNFECDMCDMKFFGRKDLRKHMVRHTGQRDFHCDICGKAFTRKFTLNQHMRVHVKERRRASSESKDRYLIIMESDVEAGKHSHTEYNEDAGEIKVSEMQSLSNDVENYNIDNKKERIKSDKKIKLKPIKELSKHHNNIKEVLQGSNATPIHGRSDIGYLCCYCNEQYADPADLKAHTLVNHENNSNATFLRKRDLKKYHVKVDITGLKCKICDQSIENLDQLINHLKIDHNRKIYTDVKNHIVPFKFDSNELKCFLCSTVYTKFKMLLEHMHKHCRNFVCTLCGNGFFNRRSLLNHDKRHNLGEFKCEHCEKVFDNIQKKNSHVRTVHVHGYLLNKCGYCNQKFPGYRTKAEHLKTVHGIGVEPVKCQACEKSFCNSDSLRKHIKRHHLMEGRYSCSECDMKFYGNKDLVEHMVKHTKTRCFQCKVCLKRYGRQHTLREHMRIHDNDRRFKCDICGMAFVQKCSWRRHMLAKHGEQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -