Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 7.3e-12 1.2e-08 35.2 0.0 4 39 60 96 57 100 0.90

2 4 9.5e-12 1.5e-08 34.8 0.3 2 39 112 149 111 152 0.92

3 4 2.6e-15 4.2e-12 46.3 0.1 2 45 167 211 166 211 0.96

4 4 0.0095 15 6.0 0.0 1 13 218 230 218 234 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	7.3e-12	1.2e-08	35.2	0.0	4	39	60	96	57	100	0.90
2	4	9.5e-12	1.5e-08	34.8	0.3	2	39	112	149	111	152	0.92
3	4	2.6e-15	4.2e-12	46.3	0.1	2	45	167	211	166	211	0.96
4	4	0.0095	15	6.0	0.0	1	13	218	230	218	234	0.90

Coding Sequence: ATGATGTCGACCAACGAACTAGCCGATTCAGCTGAATTTGTGCCGTTAATGTGTATAAAGGACGAGCCCACTTCTGAAGGAGAACACCAACAGCTGAGCGGCGATGACACAAGCGACTCTAACGGTCCACCACCAGAGACCGTCAGCCGGGGCAGCCCCAAGAGCTGGTCGCAGCAGGACATGGAGAAAGCCTTGGAGGCCCTCAGGAAGCATCATATGAGTCTGACGAAAGCATCAGCGACATACGGTATACCGTCGACTACCCTCTGGCAGCGAGCGCATCGCCTCGGTATCGACACCCCCAAGAAGGAGGGCGCTTCCAAGTCCTGGAGCGAAGCAGACCTGCGAGGAGCGCTGCACGCGCTGCGGGCTGGCGCCATATCCGCTAATAAGGCCAGCAAAGCTTATGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCCGCGCCCTTCAACGCCGCGCCCACGGCCTGGCGCCGCGCCGACCTGGAGCGCGCGCTGGCCGCCATCCGCTGCGGCGCCGCGTCCGTGCAGCGCGCCGCCGCCGCCTTCGGGATACCGACCGGTACTCTGTACGGCCGCTGCAAGCGCGAGGGCATCGAGCTGTCTCGCTCCAACCCCACGCCGTGGTCTGAGGACGCCATGGGGGAGGCGCTGGAGGCTGTCAGGTATGACTCAAGTTTATGA
Protein Sequence: MMSTNELADSAEFVPLMCIKDEPTSEGEHQQLSGDDTSDSNGPPPETVSRGSPKSWSQQDMEKALEALRKHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRCGAASVQRAAAAFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRYDSSL

Sequence clustering based on sequence similarity using MMseqs2