Basic Information

Gene Symbol
prg
Assembly
GCA_947086495.1
Location
CAMTZB010000011.1:7203496-7205303[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.083 7.5 8.1 2.7 1 23 177 200 177 200 0.86
2 10 0.001 0.092 14.1 0.3 1 23 206 229 206 229 0.98
3 10 2e-06 0.00018 22.6 2.2 1 23 235 257 235 257 0.96
4 10 4.3e-07 3.9e-05 24.7 3.0 1 23 263 285 263 285 0.99
5 10 1.9e-05 0.0017 19.5 0.1 1 23 291 313 291 313 0.97
6 10 0.00099 0.089 14.2 0.5 1 23 319 341 319 341 0.95
7 10 7.8e-05 0.0071 17.6 1.0 2 23 437 459 436 459 0.95
8 10 1.1e-05 0.001 20.2 3.4 1 23 465 487 465 487 0.98
9 10 1.7e-05 0.0015 19.7 2.4 1 23 493 515 493 515 0.98
10 10 0.0039 0.35 12.3 0.0 3 23 524 544 522 544 0.92

Sequence Information

Coding Sequence
ATGGATGATTCCTTTATTATTGCAAACTTTCACGCACTTTGTCGCCTCTGCCTATGTAAAAGTAGCCTCACTGCCTCCATTTTTAGTAATATTCCTGATGACGATACAAATACATCTCTAACCTCGAAAATTGCCGAATGTTTCGAACTACAGatGGACCCTAATGATGGTCTTCCTACTAGGATCTGTTATAAATGCttatttaaactaaataaatgttCCAAATTCAGATCACAATGTATTGAAAGTGAAGCTAGACTAAGACAGATAACAAACCATGTGAATGAATTAGACAACTCCAATTCATCAGAACTGAgtacttttaattataataatatacaggAATCCCAAAAGCCGAAACCTGAAGATTATATTGTTGAAGACAGTGTTGTAATGGTTGTTGATCCTAGCCTGGATTATGATTCATCTGAGGAGTCTGAAAATGTTGATCAAACTGAAGTTGAAACAGTGGAGAGAGATAATACACCTGATGGAGAAACAAATTCGGAATCATTTTACAAGAATGTTTTCATGTGTAAATACTGTGACCAAGCTTTTATTTCGCAGGAAAAGTGTAAAGACCATGAACAAGGCTTCCATGACCCTAATCTTCCTTATAGATGTGTTGAATGTAGTTTGGTCTTTGCTGAACGTAGTCAATATGTTGCACACACCAAGAAAGTACACGGCAGTGACAAACCTTACAACTGTCCTGAATGTAACAAATGTTTTGGTCGGAGGTCAGATTTACGGAAGCATTCAATTGTACACACTGGTGTGAGGCCTTTTCAATGCCAATATTGCTTGAAGAGTTTTTCTCGTAACACTAATTTGAGTAAGCATCTGAGAATTCACGCAGGACACAAACCCCACGTATGCCCTTTGTGCCCTCGTAGTTTTGTAGCAAAGGGAGACTTACAAAGGCATGTTTTAGTTCATTCTGGAATGAAACCTTATGCATGTCGCAAATGTCCATTAACATTTGGACGAAGAGATAAGCTTATTAAACATGAAGTAAAGCATGGTACTGTCAGTCCAGAACCTAAAGAATATGAGAATGAGCAAGATACCCATGACATGGTAGTCAATGTAAATCCATTTAGCAATCTTATGACTTCACCTTTACAACAAAACTCTGGTAATTCAAATAATGAGTATGAATTGCCTAGAGTGCCAGACCACATTGTTGGTGAAGGAAGCTTTGTAACCCAAATACATAAGACTCCCTCCACTTCAAGTAAACTTACACAAAACTCCCCTCCTAAACAGAAAGCCACAACCTCAAACAAAAACAGACCTAAAAATATTAAGTGCCACCAATGCCCTAAAAGGTTTTCTTCATTAGATGCTTACAAAACTCATGTTTCAATAGCACATATTGGATCAAGGGTCTTCCAGTGTAAAATATGTTTCAAAAAGTTCTCCAGGAAAAGAGAACTTGATCGCCATGTTACTACACACTCTGGAATGAAGCCATTTAGTTGTAGTCAATGTGATAAAAAGTTCATTAGAAAGGATAAACTAGACAAACATGAACAAACACATGAATGTTTGGTTGTAAACATGCCTTGTATAGAGTGTGGTGCCACTTTTGAAAAGAAACCAGACCTAGTAGCACATATAAAATCTCATTTCACAGataattttgatgaaaaaatcaCAGAAATTAAAAAGGAAAATGAACCTGATTTTAATATGGATGATAGCTTTTATAGCTTACAAACTTGA
Protein Sequence
MDDSFIIANFHALCRLCLCKSSLTASIFSNIPDDDTNTSLTSKIAECFELQMDPNDGLPTRICYKCLFKLNKCSKFRSQCIESEARLRQITNHVNELDNSNSSELSTFNYNNIQESQKPKPEDYIVEDSVVMVVDPSLDYDSSEESENVDQTEVETVERDNTPDGETNSESFYKNVFMCKYCDQAFISQEKCKDHEQGFHDPNLPYRCVECSLVFAERSQYVAHTKKVHGSDKPYNCPECNKCFGRRSDLRKHSIVHTGVRPFQCQYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLQRHVLVHSGMKPYACRKCPLTFGRRDKLIKHEVKHGTVSPEPKEYENEQDTHDMVVNVNPFSNLMTSPLQQNSGNSNNEYELPRVPDHIVGEGSFVTQIHKTPSTSSKLTQNSPPKQKATTSNKNRPKNIKCHQCPKRFSSLDAYKTHVSIAHIGSRVFQCKICFKKFSRKRELDRHVTTHSGMKPFSCSQCDKKFIRKDKLDKHEQTHECLVVNMPCIECGATFEKKPDLVAHIKSHFTDNFDEKITEIKKENEPDFNMDDSFYSLQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00353374;
90% Identity
iTF_01018786;
80% Identity
-