Mach027856.1
Basic Information
- Insect
- Morpho achilles
- Gene Symbol
- -
- Assembly
- GCA_947086495.1
- Location
- CAMTZB010000027.1:2749301-2751652[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.9e-06 0.00053 21.2 5.1 1 23 6 29 6 29 0.96 2 20 0.0014 0.12 13.7 1.2 2 23 35 57 34 57 0.95 3 20 7e-06 0.00063 20.9 0.3 2 23 66 88 66 88 0.97 4 20 1e-05 0.00091 20.4 1.5 3 23 98 119 97 119 0.95 5 20 1.4e-05 0.0012 20.0 1.7 2 23 127 149 127 149 0.96 6 20 8.3e-06 0.00075 20.7 0.7 2 23 157 179 156 179 0.95 7 20 5.5e-06 0.0005 21.3 1.2 1 23 185 208 185 208 0.97 8 20 0.14 13 7.4 0.3 1 23 216 239 216 239 0.91 9 20 0.0057 0.51 11.8 3.6 1 23 258 281 258 281 0.95 10 20 5.2e-05 0.0047 18.2 0.1 1 23 315 338 315 338 0.97 11 20 0.19 17 7.0 1.0 2 21 346 365 345 366 0.92 12 20 0.55 50 5.5 2.7 2 23 375 397 374 397 0.93 13 20 0.55 50 5.5 6.1 1 23 419 442 419 442 0.95 14 20 3.1e-05 0.0028 18.9 0.9 3 23 450 471 449 471 0.97 15 20 3.4e-05 0.0031 18.8 2.2 2 23 478 500 477 500 0.94 16 20 0.013 1.2 10.6 1.5 1 23 506 529 506 529 0.96 17 20 0.15 14 7.3 6.7 2 23 537 559 537 559 0.95 18 20 0.0061 0.55 11.7 0.2 1 23 566 589 566 589 0.96 19 20 0.0046 0.41 12.1 2.8 1 23 596 619 596 619 0.97 20 20 0.024 2.2 9.8 2.2 5 23 634 653 631 653 0.89
Sequence Information
- Coding Sequence
- ATGTCGAATCCGGACTATCAGTGCGACTATTGTTATCGCTCGTTTACGCGAAAGTACAACTTGCAAACTCACATAGAAAACTGTCACTTGAACTCGTCATGCTATTGCAATATTTGCGGCCAAAAATTCGGGAGCCCCGCCGGTTTGCATCTCCACCTTAGCAGGGGTCACAACAGATTCGGCCAAGGATACCCCGAATGCGACCTATGTGGACGTGTGTTCACCCGAAAACAAAACATCACCTCCCATATGATAACCGTCCATTTGCAAAGCGGGAAAGCAGTCGTCTTCTGCAATTTGTGCCCAAAAACCTTCACAACAGAACGCAATTTGAAGAGGCATGTCAAACAGGTCCATAATCCAGATATAGAGTACCCATCTTGTGATGATTGCAACAAAGTTTTCAAAGGAAAGCATTCCTTGATCGTGCACATGCAATCCAGACATTGTCCTGTCAAAGGTTTCATTAAATGCGATATGTGTGAAAAGGTTTACACGAATAATAGGAATCTTAAAAGGCATGTCGAGATGCAGCACGGGGAAAAGGAAGAGTTCAAATGCGATATGTGCCCAAAAGTGTACACGTCTAACCAGAGTTTAAGACGGCACGCCAAGTCGCAACACATCAGTGATAATAACGACCAATACACTTGCGAGTATTGCTTAAAAGTTATCATTGGGAAGGAGAATTTGGACAGTCACGTCTCTTTCTACCACAGAAAAGAGTTCAGTTGTTATGGAACGGAAACTTTCGATTCCAGCAAATACGAATTTCTCTGTACAGTGTGCCACATGAGATACAAAAAGGAATATCTGTTGAGGCAACACGTGAAAACAACGCACACCTTCCAAGAGTTCTACGAATATTGCAGACAGTCCCTAATCAAAACTAATGTGCAAACAAACTCTGACCCAAAGAAATCTAAGAGTAGAGAAAAAACGTACAATTGCGAGTATTGCGTTGAAGCTTTTGTGACTGTCTACGAATTGAAGGACCATATGAGGTCCGCACACGAAAAGAACTATTGCTTGTCCACTTGCAACGTGTGTTTCAAAAAGTTCTTCAGCGATGAGAGCATACAGAGACACAAAAAGGTCTGTCTGCCACCCAAAGACGTGAACAAGTGTAGACACTGCGAAAAGCTATTCACGGATGTCTCTAGTCTCGATTTCCATACGAGAATCTTCCATTCAGAAGCCCAATCAAACTCGAACATATCGGCTAATTTGGACGACTCAACCGATCCCTGTTCTTACAAATGTATCCATTGCGACAGGATATATTTCAGTGAAAGATCCCTAAAACACCATACCAAATTGAAACACACTACTGAAAAGAGAGTAGATTGCCAGTACTGCGGAAAGATTTGCAGCAACAAATACTATCTGGCGTCGCATATAAAGATAGTCCACACAAACGATTCCTGGTCTAAATGCGATTATTGCGACAAGCAATTCAAATCTAAAAGGAATATACGCAGACACATAGAATACACGCATATGGGAATGCAGAGATATAAGTGTATCGAATGTGAGACGTTATTCAAAGAGAAGAGGAGTTTGAGGAAACATGTGCGAATCAAGCATCCAAATTCATCAGCATTCCCCCAATGCCATATATGCCATAAACGTTTCGAATCTGCCAAATCTTGTAAGATACATCTGAAGTTAATACACTCGTTCAATATGAACACTCATCCATGCGATTTGTGTTCCGTATCTTTCGATTCCATAGAAGCTTTAAATGTCCATTTATCGACAAAGCATTTGGCTGAAGATGAGATATACAAGTGCCAAGAGTGCAATTTGGTGTTTAAAGGCCATGAAAGGTTCGAACGCCATACTGCGACCTTCCATGGGAGTTTGCCAGCTATGAAGCAGATGTTGCCTAGATGCATAATCTGTATAAAGGACTTTAGTACGCGCAAAACTCTAAAACGTCACATAAAGAAATTCCATAATGAGTTTAATGTTGACGAATTGGCCACTTATGGGTCCAGAAGGCGAGATTTTAACGTCGATTGCGCTGAGTGTATTAGAAACTTTAATGATGACTATTATTATGGGATATACATGATATTGAAGCATTTAAGAGATTCTATTATATTCAAGTGCGAATCATGTGGCAGTTCGTATAATTGTTTGGAATATTCCATACAGAGATACAAGTTGAATTTCGACGTGTCTCAAAGCAAGTTGTATTTGAGCGAGTTATGTACAACGCAAATGAGCGATGAGTCTAAATATGACTCAGTTAATGAGTCTATGGAGAATGATGGGGATATAAAAATCGAGCCATCAGATATTGATattaattatcaaataaaattggAGCCAATGTCGCCATCTTGA
- Protein Sequence
- MSNPDYQCDYCYRSFTRKYNLQTHIENCHLNSSCYCNICGQKFGSPAGLHLHLSRGHNRFGQGYPECDLCGRVFTRKQNITSHMITVHLQSGKAVVFCNLCPKTFTTERNLKRHVKQVHNPDIEYPSCDDCNKVFKGKHSLIVHMQSRHCPVKGFIKCDMCEKVYTNNRNLKRHVEMQHGEKEEFKCDMCPKVYTSNQSLRRHAKSQHISDNNDQYTCEYCLKVIIGKENLDSHVSFYHRKEFSCYGTETFDSSKYEFLCTVCHMRYKKEYLLRQHVKTTHTFQEFYEYCRQSLIKTNVQTNSDPKKSKSREKTYNCEYCVEAFVTVYELKDHMRSAHEKNYCLSTCNVCFKKFFSDESIQRHKKVCLPPKDVNKCRHCEKLFTDVSSLDFHTRIFHSEAQSNSNISANLDDSTDPCSYKCIHCDRIYFSERSLKHHTKLKHTTEKRVDCQYCGKICSNKYYLASHIKIVHTNDSWSKCDYCDKQFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRIKHPNSSAFPQCHICHKRFESAKSCKIHLKLIHSFNMNTHPCDLCSVSFDSIEALNVHLSTKHLAEDEIYKCQECNLVFKGHERFERHTATFHGSLPAMKQMLPRCIICIKDFSTRKTLKRHIKKFHNEFNVDELATYGSRRRDFNVDCAECIRNFNDDYYYGIYMILKHLRDSIIFKCESCGSSYNCLEYSIQRYKLNFDVSQSKLYLSELCTTQMSDESKYDSVNESMENDGDIKIEPSDIDINYQIKLEPMSPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01018755;
- 90% Identity
- iTF_01018755;
- 80% Identity
- -