Mlae006371.1
Basic Information
- Insect
- Monopis laevigella
- Gene Symbol
- -
- Assembly
- GCA_947458855.1
- Location
- OX375842.1:30324003-30346701[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8 2.5e+02 3.5 0.4 1 23 252 275 252 275 0.93 2 13 0.18 16 7.3 0.4 1 20 283 302 283 305 0.93 3 13 2.7 2.4e+02 3.6 1.6 1 23 309 331 309 332 0.94 4 13 0.0032 0.27 12.8 0.4 1 19 339 357 339 360 0.93 5 13 0.005 0.44 12.2 2.0 2 22 368 388 368 388 0.91 6 13 0.0059 0.51 12.0 1.8 2 21 419 438 419 439 0.92 7 13 0.00033 0.029 15.9 0.1 2 23 458 479 457 479 0.94 8 13 0.00014 0.012 17.1 0.2 1 23 484 506 484 506 0.98 9 13 0.024 2.1 10.0 3.1 1 21 515 535 515 536 0.94 10 13 0.00056 0.048 15.2 2.2 1 23 548 571 548 571 0.92 11 13 0.029 2.6 9.8 0.3 1 23 577 600 577 600 0.93 12 13 0.031 2.7 9.7 0.3 3 19 616 632 614 633 0.89 13 13 1.2 1e+02 4.8 0.5 1 23 646 669 646 669 0.93
Sequence Information
- Coding Sequence
- ATGAATTATAATAATAATGAACAGTACAGAAAACCGATTCCAGATGGGCTGGAGGTCCAGGTGTGCTGGGAGTGCTGTGCTAATATCACTAAAGTACTGACCTTCCAGAAGAGAATACAGAATGCTTTTTCTATACTTCTGGATTATTCTACAAAGCATACGTTTCTAGATTCCCATGCAGACCTGTCCCAGCATGCCTGTGAAACATTATCTAAACAAATAGTATCCTTAGACATCAATAAGACTTGTGATGATGATGTTAAGGTCAAAGAAGAAATTTTTGATAACTTTGATGATGGACTCCAGGATGCTGATGAATTCCAGAATACTGATCAATTCCTGAATGTTGTTGAATTACAAAATGCTGATAAATTCCAGAATGTTGATGAATTCCGGGATGCTAATGAACTCAGAGATTATGATATAAAAACCAATAATTTGCCCGTCAATAATGTTGAAGAGGCAACAAAAGAAATCAAAATAAAATTTGAAAACTCAGGTGAACTAGATGATGTACAAGACATTAAATTTGATATTATCCCGGAGTCATCAGACGACGACATTCAACTATCTAAGTTAAAGAAGAAAAAAGGGAAAAAAGCACACAAGAAGAGAAAAAACAGTGAAGATAAAATATTTCGTAAGCTGAAGAATTTACCTAAAGGTGTTGTAGAGATGATGGTGCTTAGTGAGCAGAAGATGTGGGAGATCCGAGGGAAGGATGTAGTGGATCCAGAATTTGTAGGCCTCAAGTACAAGTGCGTGGATTGTATTATAGGATTTGGGATGCAGAAGTTGATGGAACACCACTTGAATGGACGTCATACACCTAAAAACGATCAGTCATTCCAATGTGATGTTTGCAAGTCGTTTTTCCTAACAAAGGAGAACCTGGCCGTGCACAGGCCCATACATCTGTTTGGGTACCGCTGCAAGATGTGTGTGTACGAGACGGGGCTGAAGAGGCTGATCGTCAAGCATGTCAACACTCACCACCAGGGGGTCATCGGGCAATATGCTTGTAGGAACTGTAATAAGGAGTTTAGTTCAAAAAGCAGGTTAATATATCACAAGGGAGTGTGCATACAGGAAGACAAACCCCAGTGTGATTGTTGCGGCAAGGTGTTCGCCAACAAGACGACGCTCAAGTACCATCTCAAAAGACAAACCCCAGTGAGATTGTTGCGGCAAGCTGTTCGCCAAAAAGAGGACGCTCAAGTACCATCTCAAAATATATCACAAGAAGACAAACCCCAGTGTGATTGTTGCGGCAAGGTGTTCGCCAACAAGACTACGCTCAAGTACCATCTCAAAAATTTATCAGCCGCCGCCGTCAAAAAGCCGGAGAAGCGGAAAGAGGAAATTTGTTTGCCGTGCAAGGGATGCAACAAGGTGTTCGACACTAGGAAGGGATACCGCGCTCATGTGGTAATCCACGAAGGAGTGCAGTTCCCCTGCCCCGTGTGCGGGAAGCTGTTCCAGTGGAAGCGTAACCTGGCGCGCCACATCCGCAACCACAGCGAGCGCGACACCGGCCTGGTGTACGAGTGCGCGCCGTGCCGCAAGCGTTTCTCCAGCAAGGACTGCTTCAACAACCACATGAAGTTCAGCAAGAAGCACGTCTCCGAGGACAACTACCTCCACCAATGTACTTACTGCGGAAAGAAATTCCCGACAAAATGGTGTATGGTGGATCACATAGACTGGGACCATCTGAAGAAAATCAAGTACCAGTGCCAGACCTGTTTGAAGGCTTTCAAGACTGCAAAAATAATGGTAGCACACATCAACAACCTACACCGAAAGAAAAACAAGAAAAACGAAGATCCAGAAACCGAACACCTCTGTGATATATGCGGCAAGTCTTATACGAGTGTGAAGCGCCTGAAGGGGCACGTGTGGGCGATGCACACGCACCGCTCCACCAGCAAGAGCTACAAGTGCGCGCTGTGCCCCGCCACCTTCATGTGGCAGACCTCCATCTACAAGCACACCAAGATGATGCACGACAACAAGAAGAACAAGACTATACCATCAGCAAAAACGAAATCAAGAATGGAACTGTACGAAGGTGCCCAGTCCTATTCCATGGGAGCCTACCAGATACGACAGGTCTAA
- Protein Sequence
- MNYNNNEQYRKPIPDGLEVQVCWECCANITKVLTFQKRIQNAFSILLDYSTKHTFLDSHADLSQHACETLSKQIVSLDINKTCDDDVKVKEEIFDNFDDGLQDADEFQNTDQFLNVVELQNADKFQNVDEFRDANELRDYDIKTNNLPVNNVEEATKEIKIKFENSGELDDVQDIKFDIIPESSDDDIQLSKLKKKKGKKAHKKRKNSEDKIFRKLKNLPKGVVEMMVLSEQKMWEIRGKDVVDPEFVGLKYKCVDCIIGFGMQKLMEHHLNGRHTPKNDQSFQCDVCKSFFLTKENLAVHRPIHLFGYRCKMCVYETGLKRLIVKHVNTHHQGVIGQYACRNCNKEFSSKSRLIYHKGVCIQEDKPQCDCCGKVFANKTTLKYHLKRQTPVRLLRQAVRQKEDAQVPSQNISQEDKPQCDCCGKVFANKTTLKYHLKNLSAAAVKKPEKRKEEICLPCKGCNKVFDTRKGYRAHVVIHEGVQFPCPVCGKLFQWKRNLARHIRNHSERDTGLVYECAPCRKRFSSKDCFNNHMKFSKKHVSEDNYLHQCTYCGKKFPTKWCMVDHIDWDHLKKIKYQCQTCLKAFKTAKIMVAHINNLHRKKNKKNEDPETEHLCDICGKSYTSVKRLKGHVWAMHTHRSTSKSYKCALCPATFMWQTSIYKHTKMMHDNKKNKTIPSAKTKSRMELYEGAQSYSMGAYQIRQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -