Mlae006242.1
Basic Information
- Insect
- Monopis laevigella
- Gene Symbol
- -
- Assembly
- GCA_947458855.1
- Location
- OX375842.1:28575964-28587893[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.17 15 7.4 0.1 2 23 279 301 278 301 0.94 2 11 0.0011 0.094 14.3 1.5 1 23 308 330 308 330 0.99 3 11 0.35 30 6.4 0.8 1 23 334 357 334 357 0.96 4 11 0.00049 0.042 15.4 0.2 1 23 394 416 394 416 0.97 5 11 0.1 8.9 8.1 2.2 3 19 428 444 427 451 0.90 6 11 0.00062 0.053 15.1 0.5 1 21 482 502 482 503 0.94 7 11 0.5 44 5.9 1.3 3 21 514 532 512 537 0.88 8 11 4.8e-05 0.0041 18.6 0.3 1 23 545 568 545 568 0.92 9 11 0.0013 0.11 14.0 5.0 1 23 574 596 574 596 0.97 10 11 0.00012 0.01 17.3 1.4 3 23 605 626 603 626 0.89 11 11 0.87 76 5.2 6.1 1 23 632 655 632 656 0.96
Sequence Information
- Coding Sequence
- ATGAGTGATTTATTATGTCATGCCTGTCTCTCTTCTGGGCGAAAACTTCAATTACTAAATGGTTTTACAAAAACCCAAAGTTTTCTTCAAATTTTAAGTGAAATACGTATGTGTCCACCTACTAAGTCTGTAGTTTCCATTTGTTGGGAATGTGAAGCTTTATTGGCAAGATTTATTAAGTTTAAAAAACAAGTACAATATTCCTACTCTTTGCTTAATGATTGTATAGCCAATAAAATAAATCTAACACAAATTGAAAAACAATCTAATTTACAAATAAATAAATTTGAATCAATCAATATTGTGATAGATAACAACAAACAGATTGTTGAAGAAATCAAATTAGAAAAGGATGTATTATATGATGAAGAAGATCTAAAAAAAGAAGAACCACCAAAAGATGATTTTAAAGTTTGTTCAATAGATTTTGAAAATGATAAACATGATTTTGAAAATGACTATAATAATTTTGATAATGAAAGTAATGATTTTACAAATGAAAGTAATGATTTTACAAATGAAAGGCCAGTTTTTGTTAATGATAGTCATGATTTTAAAAATGATAGTCATGAACTTGAAAATGATGGAGATTTGGATGACTCAAAAAATTTTAAAGAAGAGGCAATTGAAGTAATTTTGAAGACGAAGATAAAAACGAAAAAAACACCAAAAAAATTAAAAAGAATTAATGTTAAGAATGGTAATAAAAAAACTAAGAAGAAACGAAAAGCTAAACAGACAGATGTTTGCACAATGATTATTCTTACTACAGAAGAAATAGAGGCTGAAAGAGGAGTATTAGCTAACAGTGAGGTATATGCTAACTCCAGCATAAAGTGCGACAAATGTATATTGGCATTTCCTAACGTAGATGACCTGCAGGATCATATTACTAATAAACATGATATAAAAGCATACAAATACAAATGTGACATATGCGAGTGTGTGTTCATAAATGCCCTGTCATACAACTACCACATTAACAAGCATTACAAGAGGTATAGATGCATAGTCTGCCATCTCAGCCTGACTACCCAAAGAGCCATAGTTCGCCATTATAATATGGCACATACTACCTCAAAAGCCTATTATTCGCAACCTACCAAGCTGGCTAATCCAAATGAGTTGGAGGAAGAATCTAGTAATATGGAAGAAAGCAATGAGAACAGTTCGATTATATATCCGTGTGAAATTTGCGACAAAGAATTCAAATGGAGGACGTCGCTGGTGAAGCATGTGGAAATGCATAGAATACAAAGCGGAGAAAAAAGACAGCCATTTTGTGAGCCGTGTGGATTAAAATTCGCCACTACATCTAATTTACAAAAGCATTGTAAAACAAGCGCGAAACACCAGATACAGTTACAGTTAAACAAGTTGCCAGAACTGTCTGCGGCGAACATAGACAAGATAAAGCTGGACGTGGCCACCGACCGGTCGCGGTTCCCGTGCCCGCACTGCGACAAGCGCTTCCAGTGGCGCGGCAACCTCCTGCGGCACCTGCAGAGCCTGGAGGCCAAGGCTCAGGGACAACTGCACTGCGCGCCCTGCTCTAGGACATTCTCCTCTATAGCCACATACAATCAGCATATGAAACTGAGCAAGAAACATATATCTGAGAATCAGTTAAAATACACATGCGATGATTGCGGCAAGAAATTCCAAAATAAAATTATGCTAAAGGACCATGTAGACTGGGAACATCTCAAGAACTTTGTGCACAAGTGCACTGTTTGCGAAAAGGTGTTCAAGAGTCACACATCGTTGTACTTGCACAAAATGATTCACAAACAAGGTATTGGTGGCCATCTTTGTGACCAATGTGGAAGATCTTTTAGCAACCAAAACAAGCTCCGCACGCATGTAACAGCGGTGCACACGAGCGAACAGCCATTCAAGTGTCGACTATGCACGGCTACATTCAGCTGGCACTCGTGCCTGTCGCGACATGTCAAGGTCGTCCATCACAAGGTCAAAGTCAAGAGAAAAAACAAGACTGAAACCCTTCACTAG
- Protein Sequence
- MSDLLCHACLSSGRKLQLLNGFTKTQSFLQILSEIRMCPPTKSVVSICWECEALLARFIKFKKQVQYSYSLLNDCIANKINLTQIEKQSNLQINKFESINIVIDNNKQIVEEIKLEKDVLYDEEDLKKEEPPKDDFKVCSIDFENDKHDFENDYNNFDNESNDFTNESNDFTNERPVFVNDSHDFKNDSHELENDGDLDDSKNFKEEAIEVILKTKIKTKKTPKKLKRINVKNGNKKTKKKRKAKQTDVCTMIILTTEEIEAERGVLANSEVYANSSIKCDKCILAFPNVDDLQDHITNKHDIKAYKYKCDICECVFINALSYNYHINKHYKRYRCIVCHLSLTTQRAIVRHYNMAHTTSKAYYSQPTKLANPNELEEESSNMEESNENSSIIYPCEICDKEFKWRTSLVKHVEMHRIQSGEKRQPFCEPCGLKFATTSNLQKHCKTSAKHQIQLQLNKLPELSAANIDKIKLDVATDRSRFPCPHCDKRFQWRGNLLRHLQSLEAKAQGQLHCAPCSRTFSSIATYNQHMKLSKKHISENQLKYTCDDCGKKFQNKIMLKDHVDWEHLKNFVHKCTVCEKVFKSHTSLYLHKMIHKQGIGGHLCDQCGRSFSNQNKLRTHVTAVHTSEQPFKCRLCTATFSWHSCLSRHVKVVHHKVKVKRKNKTETLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -