Mlae026684.1
Basic Information
- Insect
- Monopis laevigella
- Gene Symbol
- -
- Assembly
- GCA_947458855.1
- Location
- OX375856.1:20892269-20903028[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.5e-05 0.0013 20.1 1.0 2 23 268 289 267 289 0.97 2 11 0.16 14 7.4 3.7 2 23 297 318 296 318 0.96 3 11 0.11 9.5 8.0 1.8 1 23 322 344 322 344 0.95 4 11 0.0005 0.043 15.4 4.9 1 23 349 372 349 372 0.97 5 11 2.3 2e+02 3.8 0.6 1 23 376 399 376 399 0.75 6 11 1.7 1.5e+02 4.2 0.0 2 20 411 429 411 431 0.91 7 11 6.9e-05 0.006 18.1 0.5 3 23 445 466 443 466 0.96 8 11 0.00024 0.021 16.4 0.2 1 23 523 546 523 546 0.96 9 11 0.00076 0.066 14.8 2.0 1 23 552 574 552 574 0.96 10 11 2.6e-06 0.00022 22.6 1.1 1 23 580 602 580 602 0.97 11 11 0.00028 0.024 16.2 1.4 1 23 608 631 608 631 0.97
Sequence Information
- Coding Sequence
- ATGGATAATCTACTAGCATGCAGAATATGTTTAATAATGGATGTAAAAATGTATAATTTACGAAACAGGCCACTAGATAATTATTTTGAATCTGTTTTCGGAATAAATCCCCACATGTCCCACGAACTCCTCACATATGTGTGTGCTGAGTGTGCAGTCCTTGTCAAGAAATATTATATGTTCAGAGAGAAATATTTTAGAGGACTCACCATTTTGAAAAATTTTATAGATAATAATAAATTTACAAAAAACGACTTACAATCAATAGACAGAAGAGAATGTAAATTAAGTTCGACCATCTGTTCCTCTATACCTCAAAACATTTTTGTATTTCATTGCACATCATCCCCGGGAGTAGAGCCCGAGCATACAGCATTTATCAAGGAGGAACCTTTAGACCAAAATGGTGATGTTGGCAGAGAATATTCTGATGATGATGATAGTTCAACTCTGAAACAGATAAAAATAGAAATGGATGAAATTAGAGAGAGTTCTGTGAAGACTGAAACTAGAGAAGGGAAGAAACTAAAGGAAAAAAATAAGATAAAGAAAGATAAAAAACCAGTCCCAATAAAAGTAAAAAAAAAACAGAAATTCCAAAAGTGTGACAACAGTCAGAAACCCAGGGTCCCCAAGTCTAGGTACTCCAAGGCAGGCCCAAATACGCATAGAACAAAAATTGTCACATCCTTGGACAAAGAAATTTCTCTTCATTTTGAAGTCATTGCCCGAACGTTGGAGGAACAAAAAGAAGAGATCAGATCTCGAGAAAATACGGTGTCGTATCAGAGATCCTCCCTCAAGTGTACCATCTGCTTCAAGGCCTTCGTTCAACAAAACGCCTACCAACTTCACATGCGGAAACACGACCCGAGTGCGGGCGACATAGAGTGCGAGGTGTGCGGCTTCCGGTTCCACTCGCACGGGATCCTGCACCGCCACCAGCTCATGCACACGCACAGGTTCATCTGCAAGACCTGTCGACAGGTCTGCTCTACACGAAACGAAGCAAAAGTACATCGAATATGGCACACCGGTGTAACGTTCGAATGCAAATACTGTCTAGAGAGCTTTAGCCACAGGTCGTCGTACTTCTCGCACCTGCGCCTGAAGCACCCGTCGCAGTACATCTGCAACCTGTGCGGCCACTCCTACCTCAGCGAGGCGGGCCGCAAGCAGCACAAGAGCGTCATGCACAGAGACCAAAAGGAGCAGTCCCTGACCGGGCCCGTCTGTGACAAGTGCGACATACAGTTCCTAGACCAAGAAGCGTTTGACAGACACCTCGCCAACTCATCCAATCATATCGTTGGATCTGACTTTGCGACGGCATGTCGCGAGTGCGGACTCATGTTCAAGGAACCCAACCAGCTCAAGTCCCACCAGAGGAAGGAGCACCCCTCCGCCAAGAGACTCATGGAGTGGAAGTACGCCGACTCCGGCAGCGCGAAGTGGCCTAAGAAGTGCGACTATTGCGAGTTGGTGATGGAGAACGGTCGGGAGAACTGGTACCACCACCAGCGGGAGCATCGGGAGGAGCCCTACAGCCACACGCTGCTGCGCCACTACGTGTGCGAGGTGTGCGGACAGACCTTTGAGAAGTCGGGTGTGCTGAGGGACCACCTCAAAGAGAAGCACTCGTCGGAGCGTCCGCACGCGTGTCCGCACTGCCCCAAGGCGTTCGGCGCCGCCAGCAGGCTGCGGCACCATCTGCTGTCCCACTCCGAGCAGCGGCCCTTCCCGTGCGCCGTCTGCCGCAAGGCCTTCAAGACCGCCAGCCATCTGCAGCGACACGAGAAGATCCACACTGGCCTCCGCCCATACTCTTGCAAATACTGCAATAAGACATTTGGCACCACCACCGCAAGAAACCTGCACATACGATCTGTTCATTACAAAATACCGCCTCCCGTCAGCAAAAGGAAACTATTGACAAGAGGACTGAGGGGAGGGGAGTAG
- Protein Sequence
- MDNLLACRICLIMDVKMYNLRNRPLDNYFESVFGINPHMSHELLTYVCAECAVLVKKYYMFREKYFRGLTILKNFIDNNKFTKNDLQSIDRRECKLSSTICSSIPQNIFVFHCTSSPGVEPEHTAFIKEEPLDQNGDVGREYSDDDDSSTLKQIKIEMDEIRESSVKTETREGKKLKEKNKIKKDKKPVPIKVKKKQKFQKCDNSQKPRVPKSRYSKAGPNTHRTKIVTSLDKEISLHFEVIARTLEEQKEEIRSRENTVSYQRSSLKCTICFKAFVQQNAYQLHMRKHDPSAGDIECEVCGFRFHSHGILHRHQLMHTHRFICKTCRQVCSTRNEAKVHRIWHTGVTFECKYCLESFSHRSSYFSHLRLKHPSQYICNLCGHSYLSEAGRKQHKSVMHRDQKEQSLTGPVCDKCDIQFLDQEAFDRHLANSSNHIVGSDFATACRECGLMFKEPNQLKSHQRKEHPSAKRLMEWKYADSGSAKWPKKCDYCELVMENGRENWYHHQREHREEPYSHTLLRHYVCEVCGQTFEKSGVLRDHLKEKHSSERPHACPHCPKAFGAASRLRHHLLSHSEQRPFPCAVCRKAFKTASHLQRHEKIHTGLRPYSCKYCNKTFGTTTARNLHIRSVHYKIPPPVSKRKLLTRGLRGGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -