Mlae032002.1
Basic Information
- Insect
- Monopis laevigella
- Gene Symbol
- -
- Assembly
- GCA_947458855.1
- Location
- OX375846.1:2848744-2856550[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.41 36 6.2 2.0 1 23 173 195 173 195 0.95 2 10 0.49 43 5.9 0.7 1 19 219 237 219 240 0.94 3 10 0.0023 0.2 13.3 0.3 3 23 263 283 261 283 0.96 4 10 1.3e-06 0.00011 23.5 0.4 1 23 287 309 287 309 0.98 5 10 0.056 4.9 8.9 1.0 1 23 314 337 314 337 0.95 6 10 0.19 17 7.2 2.4 1 23 343 366 343 366 0.93 7 10 6.1e-05 0.0053 18.2 1.3 1 23 373 396 373 396 0.98 8 10 0.00039 0.034 15.7 1.5 1 23 402 424 402 424 0.95 9 10 9.3e-06 0.00081 20.8 2.1 1 23 430 452 430 452 0.98 10 10 0.00022 0.019 16.5 4.5 1 23 458 480 458 480 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAAAATATAATCGTGGAACCGTTACCTACATTGGGAACATGTAACTTGTGTTCAAATAATGGTGATATTCGAAGTATTTTTTCGAAAAACAAACAATGTAAAGAAATCTATTCCAACTTGTTTTTACAGTGTTTTGGCATTGATATAACTTTGATGTATCTTGGAGATATAAAACTGATGATCTGCCAAGAATGTATAGTGAAATTACTAGACTGTGTATCTTTTAAGAAATTGACCGAAAAATCGTTAAAGAATCTAGAAGAGAATGCTGTTAAAGAAGTAAAAGTGGAGGTTGATTATTATGATGAGTCTGATTTTCTGTCTGAAGATGATGAAGCCCTGGCCTATATGATACAAGATGATAAAAACAAAACAAACCCATTTGAAATAGACATAAATGACACCGAAGACAAATTAAATGATACGAAACTAAACATACTTTCAAACAATGGCATATTCACAGACATGCTAGAAAGAGGGTTGTTCCCATTTAAATATCATAAAAGGCTTTACAGATGCGTAAACTGCACGCATAGATCGGAAAACTTGGACTTGTTAAAAACCCATTTTGAGGAACACACCAACAAAAATTTATCTGCAGCTTACAAAAATCTACGCCACAGTAAATTTTTAAGTGACAACCTTAATTTTCGATGTAAAAGATGTAATACCGAAGTTAAGAATTATAATGAAATGAAAGAACATTTCGAGGAGTGTGGGAAGAAAAAATGTTCAGAGACTGGTAATTTACCCTTCAAGTTGAAAAAGGATCAGTTAGACTGTCCTATATGCAACAAGAAGTTTTTGAATTTCATGACTTTGAACATTCATATGAACGCACATTATCCTAATTATATATGTGAAAACTGTGGGAAAGCTTTCGCGTCCAAGCAGAGGCTGAGAGGCCATATGAGGACGCACGAAATTGGGGAGTTTCAGTGCAGATATTGTGAGCAAGTGTTCGAGAAAGTGACGCAGCGGGAGAACCATGTGTCGAAGGAACACAAACTGAATGCTAGATATATTTGTCGAAAATGTAAATGTGCCTTTAATTCTTTCTATGCACGACAAAAGCATTTAGCTGAAGCCCACAATGAGGACTTGCGGAAATATAAATGCAAGGCCTGCACCCAGAGCTACGTGACTCCAGGACATCTCTCCAGCCACATCAGACGAGACCATCTACACGAGAGGAACTACAAGTGTGACAAATGCGACTTAGCATTTTATACGCGGAATTCCTTGAAGATGCATTCGGTGCGGCATGACGGAGAACGCATATATAGTTGTACTGTATGTTCTAGATCATATCAAAGACAGAAAACTTTGAAGGAGCACATGAGGATCCACAGCGGGGATAAAAGGTTTGTGTGTCAGTTCTGCAGTCGGGCCTTCACGCAGAAATGTACGTTAAAAAGTCATTTAAAAATTCATAAGATGAATAAGTTGGAAGTGGAACCTAAATGCGAATCTCCTGTACATTCTGTTGACAATTTAAATTAG
- Protein Sequence
- MEENIIVEPLPTLGTCNLCSNNGDIRSIFSKNKQCKEIYSNLFLQCFGIDITLMYLGDIKLMICQECIVKLLDCVSFKKLTEKSLKNLEENAVKEVKVEVDYYDESDFLSEDDEALAYMIQDDKNKTNPFEIDINDTEDKLNDTKLNILSNNGIFTDMLERGLFPFKYHKRLYRCVNCTHRSENLDLLKTHFEEHTNKNLSAAYKNLRHSKFLSDNLNFRCKRCNTEVKNYNEMKEHFEECGKKKCSETGNLPFKLKKDQLDCPICNKKFLNFMTLNIHMNAHYPNYICENCGKAFASKQRLRGHMRTHEIGEFQCRYCEQVFEKVTQRENHVSKEHKLNARYICRKCKCAFNSFYARQKHLAEAHNEDLRKYKCKACTQSYVTPGHLSSHIRRDHLHERNYKCDKCDLAFYTRNSLKMHSVRHDGERIYSCTVCSRSYQRQKTLKEHMRIHSGDKRFVCQFCSRAFTQKCTLKSHLKIHKMNKLEVEPKCESPVHSVDNLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -