Mlae006160.1
Basic Information
- Insect
- Monopis laevigella
- Gene Symbol
- -
- Assembly
- GCA_947458855.1
- Location
- OX375842.1:27773676-27791568[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.9 4.3e+02 2.8 2.8 1 23 249 272 249 272 0.92 2 10 0.0023 0.2 13.2 1.2 1 23 277 299 277 299 0.98 3 10 0.0018 0.15 13.6 0.1 1 21 336 356 336 359 0.91 4 10 3e-06 0.00026 22.3 0.4 1 23 363 385 363 385 0.98 5 10 0.00059 0.051 15.1 0.0 2 23 392 413 391 413 0.97 6 10 1.6 1.4e+02 4.3 7.5 2 22 421 441 420 445 0.92 7 10 8.3e-05 0.0072 17.8 0.7 2 23 451 473 450 473 0.96 8 10 1.2e-05 0.001 20.5 0.9 1 23 479 502 479 502 0.94 9 10 1.6e-06 0.00014 23.2 0.9 3 23 513 533 512 533 0.97 10 10 0.0002 0.018 16.6 0.2 1 23 539 562 539 562 0.96
Sequence Information
- Coding Sequence
- ATGAACGGTTATGTAGATAGTAATTGTTGGTTTGATTTGTTCTTGGACCTTTATACTGCTTTTGATCAGGTTGGTCCAGAACATTTGATATGCTGGGAGTGCGAAGCTGTTCTTAGAAAATGGACTAGATTTGTTGAACAGGTTTTGAACACTCAACATCATTTGAATACTGAGGGTATAAGAGACAGTTCAAGTAATCTTGTAGAAATACATAAAATTGGATTTGACAAAATTTTATATTTTAATTCTGAAGAAACACAACAAATTAACACTCAATTTGATTTAAAGGAAATACAATTAAATAACATTAAATGTGAATACTACTTAGATGAGGAACAACAAATTGAGACAAAAAATAATATTAATACTAAATGTAAAAATGAAATTTCGTTTGAAGATGTTTTATGTAAAAAGAATATTAAAATAACACCAATTAAAATAGAAACCAATAACGAGATAATTTCACAAGAAAATATTAATGAAGAAGATACAAATCTTGAAGGGGACGAGTCAAATCTTGAAGGGGACGAGTCAAATCTTGAAGGGGACGAGTCAAATCATGAAGGGGACGAGTCAAATCATGAAGAAAAATTCTTTAAAATTAAATTTCAAGAAACTGAAAAATTATTAAAACTTGCTAACAATGACAAAGGGGTAAAGATAAACTTAGAGAACATGAGTGAAGCCAACATGTTACAAATAAGAGAACATGAAAAGAAAAGCTTCCTTTTTAAAAGATTCAAATATAAATGTGAGACCTGTATTAAAGGGTTTATGACGGATATCAAATTGACATCCCATAAAGTTAAATGTCATACTAACGGGTCTTACATTTGTAACATATGCGAAACTAAATTTGAAACAGAAAGATCAATGAACTTACATAAGAAGTCGCACTACATAAAATTTGTCTGTGCAATGCCTGAATGCCCGTTCGTGCATATTTGCAGGAAAAATGTCGCCGACCACTACTACAGATGTCATTCGTCACATACTCGTAAAACCTATACGTGCACAATGTGTAAAGCTATTTTCTCGTCGGCGCTGGCGCTGAGGAGGCACCGCGGGGCCGTGCACGCGGCGGCGTTCCGATGCGATGTCTGTGGCAAAGGCAGCACCAACCTAAGCAACCTCAACAAACATAGATTAATCCACACCGGGATTCCGCAGTTACCGTGTGAAGTGTGTAACAAGGTAGTCCGGGGCGTGGACCAGTTGGCGGCGCACCGGAGAACGCATTCGGACCACCCCGAGCACTGCTACTGCGTCACCTGCGACCGCCAGTACAAGAACTGCCGGCTCTATCAGCACCATCTTAAAACATCCAAAGCACATTGTGAAAAGAGAATGGAATGTGACTATTGTGGCAAGAAATTTACTACAAAGATAGGCATCAAATACCACATACAAAAGTCGCATATTAAAAAGACTGACCACAAGTGTGCGACATGCGGAAAGATATTTATAACGGCATATAAATTAAAAAGGCATATAGCATATGTTCATGAAAAGATGCATAAGAACAAAAATAAAATTTGCAACATTTGTGATAAAAAATTCTACACCAATCAAAATCTGTCTAACCACATGAATATCCACACAGCCTCCAGACCGTATAAATGCGCGCACTGTCCAGCGGCCTTCTCCCAGTCCGGCGGTCTGTATAACCACGTTAAATTGGTACACTTGCGCCGCCGACGGGAACGTAAAGCTATATCGTTACACCAATAA
- Protein Sequence
- MNGYVDSNCWFDLFLDLYTAFDQVGPEHLICWECEAVLRKWTRFVEQVLNTQHHLNTEGIRDSSSNLVEIHKIGFDKILYFNSEETQQINTQFDLKEIQLNNIKCEYYLDEEQQIETKNNINTKCKNEISFEDVLCKKNIKITPIKIETNNEIISQENINEEDTNLEGDESNLEGDESNLEGDESNHEGDESNHEEKFFKIKFQETEKLLKLANNDKGVKINLENMSEANMLQIREHEKKSFLFKRFKYKCETCIKGFMTDIKLTSHKVKCHTNGSYICNICETKFETERSMNLHKKSHYIKFVCAMPECPFVHICRKNVADHYYRCHSSHTRKTYTCTMCKAIFSSALALRRHRGAVHAAAFRCDVCGKGSTNLSNLNKHRLIHTGIPQLPCEVCNKVVRGVDQLAAHRRTHSDHPEHCYCVTCDRQYKNCRLYQHHLKTSKAHCEKRMECDYCGKKFTTKIGIKYHIQKSHIKKTDHKCATCGKIFITAYKLKRHIAYVHEKMHKNKNKICNICDKKFYTNQNLSNHMNIHTASRPYKCAHCPAAFSQSGGLYNHVKLVHLRRRRERKAISLHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -