Mlae006222.1
Basic Information
- Insect
- Monopis laevigella
- Gene Symbol
- -
- Assembly
- GCA_947458855.1
- Location
- OX375842.1:28302148-28316016[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.15 13 7.6 1.6 1 23 244 267 244 267 0.96 2 11 0.11 9.5 8.0 3.1 1 23 274 296 274 296 0.98 3 11 0.0098 0.85 11.3 1.6 1 23 300 323 300 323 0.96 4 11 2.2 1.9e+02 3.9 0.9 1 13 330 342 330 352 0.70 5 11 8e-06 0.0007 21.0 0.8 2 23 357 379 356 379 0.96 6 11 2.2e-05 0.0019 19.6 1.4 1 23 385 407 385 407 0.98 7 11 0.084 7.3 8.3 3.2 3 21 420 438 419 443 0.90 8 11 9.1e-06 0.00079 20.8 0.4 1 23 451 474 451 474 0.94 9 11 0.0024 0.21 13.2 5.6 1 23 479 502 479 502 0.97 10 11 1.4e-06 0.00012 23.4 2.3 3 23 511 531 510 531 0.98 11 11 6.5e-06 0.00057 21.3 2.6 1 23 537 560 537 560 0.95
Sequence Information
- Coding Sequence
- ATGGAGAAAAAAGATTTTTTATATGAAAACCTGCTATGTGCTGCTTGTTTGTGTGTTAATAAAAAAATTGAGAATATTTTTGACTATAAATTAAAAGAATATTTTTATAATATATTGAAGGAATTACCGTATTTCAGTATTTATAATACAGATGTGTTGAGGCTATGCTGGGAATGCAGATCAGTATTAAAGAAGGTCATTGAATTTAGAGAACAAGTGAAAGACTGCCACCGAATATTACAAACTTATACAAATGAAAATCTATCTGAATGCTTGTTTACGGATGTTTCTCGAACCCCCCGCCTGTCCATACAACCTCAGACTGCAGTCACTATCTACCCTCATGATCCTATCAACATATCTGACAATGACAAATGGAAGAACTCTGCTGCAGATGACAATACATTTAAGTGTGAGGAGGTCATGGTGCGTGAAGATATAAAAGAGGAAAGCTGTCATTCGGACACGGGCAATATTTATCCATCAGATAATTATGAAGATATTACCAATTTGGAAGAAGAAGTAAAAGTATTGTTAAATTCTGACAAAAAAACCGCAAGGGATGAAAAATGTAAAATTAAAAAGATTAATCGGAAATTAAAAAAAGATAAAAAGTGTTTGAAAACCAAACAACATAAAAATAAAATAAAAACCATAGAGTTATCATACAAAGAGGTAATGGAAGAAAGGAGCCAGGATGCTCAGAAGAAGCCTTATACTTCGTCAGAGTACAAGTGCAGTACCTGTATCGTGGGGTTCAGCCAGAAACCTTTATATACACACCATTTAGCTTCAAAACATTCACCTGATTTGGGTCCTTATAGCTGTCCGGTGTGCAAAACTGTGATGCATAACTTGGATACCTTCACGACGCATTATAAACGGCACACAAGAAGGTATGAATGTGTACGTTGTGGCAAGCGGACGGCGGACCGGAAGTGCCTGTTGCAGCACTACGACCGGGCGCACGAGGGCAGCGTCAAGCACTACACGTGCGACGTCTGCGGAAAGCTCTCCGTTACAATAGATTCTCATCGGTATCACAAAGGGACCCACAAAAAACGGGTGGAATGCCAAGACTGCGACAAAACCTTTAGCCACAGAGCTGGACTCTTGAACCATAGACTAACAGTACATAAAAGAAATAATGGGTTTCCCTGTACAGTATGTAACAAAGTGTTTAGATGGAAAACAAGCCTAAGAAAGCACATGGAGAAACATGACAAGAAGGAGAGACCGTTAAACGAACAGCCGTGCTGTGAACCGTGCGGGGTTACGTTCTCCAGCATTTGTTCCCTGCAGAGGCACATGAAGAACAGCCTCAAACATGTCACTGAAGACGAACTAAGATATATCTGTGATGATTGTGGTAGAAAATTTGCTAACAAAACTAAGCTAAGGGATCATATCGAAGAGAAGCATTTATATAAGGCATTTCAATGTCATATTTGTCATAAGGCATCAAAAAATAGAGTATGTCTGGATCAGCACATACGGAACGTTCACAAAGGTAGACCTAAGAATAAGATATGTCACCACTGCGGGAAAGGATTTCCGACAAAAGTACAGCTAGAATCTCACATAAGATCTCACACGGGCGAGAAACCGTTCATCTGCGAGCATTGTCCCACTACCTTCTCCCAACAGTCCAACCTGTACAAACACAACAGACAGGTCCACATGAACATCAAAGCCAAGCGCTACCCGATATGTCGCAAGCGCAAGGACAAGCTGCCAACAGCCCCGCTCGTGCCCGTGTTCCCCATACAGATATACCAGAACAAGGACCCACCGCCACTCATATATGTCAGCGACAAGGAATTTATACTCTGA
- Protein Sequence
- MEKKDFLYENLLCAACLCVNKKIENIFDYKLKEYFYNILKELPYFSIYNTDVLRLCWECRSVLKKVIEFREQVKDCHRILQTYTNENLSECLFTDVSRTPRLSIQPQTAVTIYPHDPINISDNDKWKNSAADDNTFKCEEVMVREDIKEESCHSDTGNIYPSDNYEDITNLEEEVKVLLNSDKKTARDEKCKIKKINRKLKKDKKCLKTKQHKNKIKTIELSYKEVMEERSQDAQKKPYTSSEYKCSTCIVGFSQKPLYTHHLASKHSPDLGPYSCPVCKTVMHNLDTFTTHYKRHTRRYECVRCGKRTADRKCLLQHYDRAHEGSVKHYTCDVCGKLSVTIDSHRYHKGTHKKRVECQDCDKTFSHRAGLLNHRLTVHKRNNGFPCTVCNKVFRWKTSLRKHMEKHDKKERPLNEQPCCEPCGVTFSSICSLQRHMKNSLKHVTEDELRYICDDCGRKFANKTKLRDHIEEKHLYKAFQCHICHKASKNRVCLDQHIRNVHKGRPKNKICHHCGKGFPTKVQLESHIRSHTGEKPFICEHCPTTFSQQSNLYKHNRQVHMNIKAKRYPICRKRKDKLPTAPLVPVFPIQIYQNKDPPPLIYVSDKEFIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -