Mlae005866.1
Basic Information
- Insect
- Monopis laevigella
- Gene Symbol
- -
- Assembly
- GCA_947458855.1
- Location
- OX375842.1:24806327-24807553[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00022 0.019 16.5 1.9 1 23 53 76 53 76 0.96 2 10 0.00011 0.0094 17.4 3.1 3 23 85 106 83 106 0.94 3 10 0.0016 0.14 13.7 1.1 3 23 115 136 114 136 0.97 4 10 1e-05 0.00089 20.7 4.1 2 23 144 166 143 166 0.96 5 10 0.00022 0.019 16.4 1.7 2 23 174 196 173 196 0.94 6 10 0.0019 0.17 13.5 5.0 1 23 202 225 202 225 0.93 7 10 0.00017 0.015 16.8 0.2 3 23 234 254 233 254 0.98 8 10 0.01 0.87 11.3 1.7 2 23 262 284 261 284 0.95 9 10 2.3e-05 0.002 19.6 2.1 1 23 291 314 291 314 0.90 10 10 4.9e-05 0.0043 18.5 4.7 1 23 320 342 320 342 0.97
Sequence Information
- Coding Sequence
- ATGGCGGAAACAAACCAAATGCTCGACCCAAAGATGGAAATGTTGGACCAATACCCAAGTGTAGAGTCTGCAAGCCTTACCGAAGAGCAAAGGCAAATGTATGAAACCATCTTACAAACATACAAACCTGTACTATATCCTAAAAAAGAAAAGCAATATATCTGCTCAAAATGCAGTAAGGAATTTAAAAATTACCAAAATCTCTACTTACACTTAACCCGAGTTCACTCATCAGAAGAATCAGCAGTAATTTGCACTGAATGTGATAAAACATTTAAAAATAAGCACTATCTATACATGCATAAAATGAATAGACATTATACAGATGATATGCGAAGTTTTTGTGAATATTGTTTACAGGAATTTAGGACCAAACGTGCTTTAACTATGCATGTAAAACGTTTACACCCTAATACAGTACCTGAGATTAAATGCCACGAATGCGGTAAAGTTTTTAATGTGCAGCATAAATTAAAACATCATTTGATGATTGCCCATCCCACAGATTTAACTCGAATGAAATGCAATTTATGTAATAAAATTTATAAAAGTAGATTGAACTTAGCACGGCATTTAAAATTTCAACATTCCCCAGTCTTTATGCACCCTTGCGTTTTTTGCCCAATGAAATTTAAATCTCGCCATCATTTGAATAGGCATGTGCTAAATATACATCCTCCGTTAGAATCCAAAGTTGCTTGTCCCGAATGTTTAAAGGAATTTAAGAATGATCAATATTTAAAGGAACATATGCAAATTCATTCTTCTGCAGATGCTAAAGTTGAATGTGATATCTGTAATAAAATATTTCATTCCACATTAAGATTAAGAAAACATAAAAAAATTGTACATCCTATTGATCAACCTAAATATCCCTGTGATGAATGCGGCAAAGAATTTAACCATGAGCATTATTTAAAAAGGCATAAAGACGCTGTACATAGTAAAGAATTGACCCACTCTTGTGAACAATGTGGTAAGAAGTTCAAAGCTAAAAAATATTTAAAAAATCATTTACAAAGACATGAACGGCAACACTTAAAACGGGTATCCCAAATGGTTAAAACGGTTTTTAATGATGACTCACAGGATAGTCAAGAAGAAGATGTAGCTAAAATGGAATTAAGAAAAAGAGTTAAAAAAGAGAAAAAAGAAATGGAATTTACTTTTGTTAAATGTGAACCAATGACAAGTACAGAGTCAGATAATAGCTCTGAAAGTGAATGA
- Protein Sequence
- MAETNQMLDPKMEMLDQYPSVESASLTEEQRQMYETILQTYKPVLYPKKEKQYICSKCSKEFKNYQNLYLHLTRVHSSEESAVICTECDKTFKNKHYLYMHKMNRHYTDDMRSFCEYCLQEFRTKRALTMHVKRLHPNTVPEIKCHECGKVFNVQHKLKHHLMIAHPTDLTRMKCNLCNKIYKSRLNLARHLKFQHSPVFMHPCVFCPMKFKSRHHLNRHVLNIHPPLESKVACPECLKEFKNDQYLKEHMQIHSSADAKVECDICNKIFHSTLRLRKHKKIVHPIDQPKYPCDECGKEFNHEHYLKRHKDAVHSKELTHSCEQCGKKFKAKKYLKNHLQRHERQHLKRVSQMVKTVFNDDSQDSQEEDVAKMELRKRVKKEKKEMEFTFVKCEPMTSTESDNSSESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -