Basic Information

Gene Symbol
-
Assembly
GCA_947458855.1
Location
OX375846.1:3504750-3515533[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 33 0.37 32 6.3 1.2 1 23 240 263 240 263 0.93
2 33 0.067 5.8 8.7 0.1 2 23 289 311 288 311 0.96
3 33 0.0014 0.13 13.9 1.4 1 23 332 354 332 354 0.98
4 33 0.51 45 5.9 1.7 1 23 358 380 358 380 0.87
5 33 0.26 22 6.8 0.7 1 19 384 402 384 407 0.85
6 33 2.3 2e+02 3.8 5.5 2 23 414 436 413 436 0.96
7 33 0.3 26 6.6 0.5 1 23 443 466 443 466 0.79
8 33 0.00033 0.028 15.9 2.4 1 23 472 494 472 495 0.96
9 33 0.00088 0.077 14.6 2.7 1 23 500 523 500 523 0.96
10 33 0.53 46 5.8 5.7 1 23 562 586 562 586 0.86
11 33 0.019 1.6 10.4 0.2 2 23 614 636 613 636 0.95
12 33 0.2 17 7.2 0.9 3 23 686 707 684 707 0.94
13 33 1.6 1.4e+02 4.3 0.6 1 13 712 724 712 726 0.90
14 33 2.6 2.2e+02 3.7 0.5 2 21 738 757 737 760 0.83
15 33 0.13 12 7.7 0.5 2 20 764 782 763 784 0.91
16 33 0.082 7.1 8.4 3.0 1 23 829 852 829 852 0.94
17 33 0.16 14 7.5 0.1 3 23 879 900 878 900 0.93
18 33 0.32 28 6.5 0.3 2 23 923 945 922 945 0.94
19 33 8.5e-05 0.0074 17.8 2.2 1 23 950 973 950 973 0.95
20 33 0.056 4.9 8.9 0.4 2 23 978 1000 977 1000 0.94
21 33 0.11 9.7 8.0 0.3 2 23 1006 1028 1005 1028 0.95
22 33 0.00049 0.042 15.4 2.6 1 23 1032 1055 1032 1055 0.97
23 33 0.025 2.2 10.0 2.9 1 19 1136 1154 1136 1159 0.90
24 33 0.39 34 6.2 0.3 1 23 1282 1305 1282 1305 0.96
25 33 0.2 17 7.2 0.1 2 23 1336 1358 1335 1358 0.94
26 33 0.0025 0.22 13.1 1.7 2 23 1381 1402 1381 1403 0.94
27 33 0.18 16 7.3 3.3 1 23 1408 1431 1408 1431 0.95
28 33 0.33 28 6.5 0.2 1 23 1436 1459 1436 1459 0.90
29 33 0.0079 0.69 11.6 0.3 2 23 1465 1487 1464 1487 0.93
30 33 0.0032 0.28 12.8 0.2 2 23 1495 1517 1494 1517 0.97
31 33 0.04 3.5 9.3 0.1 2 23 1524 1545 1523 1545 0.96
32 33 5e-07 4.3e-05 24.8 1.5 1 23 1551 1573 1551 1573 0.97
33 33 0.0027 0.23 13.1 4.9 2 23 1580 1602 1580 1602 0.95

Sequence Information

Coding Sequence
ATGGAGTTAAACTCAATAGTTGTTAAGGAAAGCCCAGGACTGTGTCGTTGTTGTTTATCAGAAGGGTGCTACAAAGACCTGGCTACCGAGTACCCGTGGATGAGTGAAACTGAAGTTTATGCAGATATGTTATTAGAATGTTTCGATATAAGTATAACACAGAATTCGGAAGGTCCAAATGGCCCAAAACGTCTCATATGTGAAGTCTGCATCACCCGGCTACGGGATGCATGTAACTTCAAGAAGCAGGTCCTAAATTCCGAGAAGAAGTTTGTGGACATGGTTGCAAGGAAACACTTTCAGCCTAAAGCCATGTTGGTATATGAAGCTCATGAACCGATGAAGACTGAGATAGATCTGGAGCCTATGCCAGGGACTTCTGGGGACTTAGAGGATGTGGAATATCTTGAGGAGGACATTGAATATGTAGATGATTACCGAGAAGAAACCATAGAAGATATACAAGAGCAGGACATAACCGTCAGCGAGTTAGAAGTCAAACCAAAAAAGTCTAAGAAAAGATCTGTAGAGGGCAAGGCAGAGAAAAAGCACAAAACGCAATCAACTGCTATTAATAAATATAAAGGTAGAATCGCGGGCGTCCACTCGAGTACGTCTTACCTTTCGACCACAAAACAAAACCGCCTCAGGAAGGGTAACGCTCTATTGCTTCTAGAATCTTCCAACGCATTCGCTTTTAAGTGGCAACGCCAGAACTACCTTTGCTTTTTCTGTCGTCGCAATTTTAACAATTATGACGTGCTCAAGGAACATACTGAAAGCGCACACAAAAATAGCAGCTTTAAAGCAGCGGTCAAGCACTTACGGAGTGACGAAAAAGTTAAAATTGATATCACCTCTCTAACGTGTCGTATATGTGATACAAACATTGATAATTTAAATCAACTCATTGACCATTTGAAAACGGTTCATAACGTAAAGTTCTTTGATGCTGATTACGGTGTCATACCGTACAAATTACAAGCCGAGAAATTCCAATGCGCTATTTGTAATGCCACTTTCCAATACTTCACAAAACTAAATCAACATATGAATAGTCATTATGGGTCCTACGTTTGTGAGTCCTGCGGCAAGTCGTTCCTCAGTCAGGATAGGTTGCGTTGCCATGCCCTCCGACACAAAAGTAAATTCAAATGTGACAACTGTCCTCAAACATTCAATTTTATGTCTCAGAAAGTTAATCACAATGCCTTAGTACACAACAAGAAAATATCGATAAAATGCTTCCACTGTGAAGCTACATTTACCACGTATTTGCAAAGAAAGTTGCACCATAAAACTGAACATAATATCAATATACCAGAATTTATATGCCCAGTTTGCAATAAAGTGTTTCATATAATGAGCCGGATGAAGGGTcatgtcaaagaagttcacaccagagagaggaattttgaatgcctcgtttgtaatcagaaatttttctcaaatgcttaccttgaaaaacatatgataagacatcacggtgaaaagacgcacgagtgtaatatttgtaaaaagctgtatgccagaaaacaaactttacgagatcatatgTTAAGAACTCACAATGGTAAACCGCTGACGGAAACGCTTTGGGAATCTCTCGCAATAAAACGCCGGCACAACCTTCAATTACTATTCAACTTTTCCTCAGTAATTCCTTTCAAATGGTCCAAATGTTATATGTGCTTTTATTGCGATAAAACTTTCAAAGAAACCGAAAGTTCAGATCTCAGGAAACATACAAAATACCACGGCGAATGCTTTCCCGATAATTACATTATCAACCAAGTCGTAAAATGCAATAAGTTTGTTAAAGTGGATGTTTCTGAGTTAAGTTGCGAACTTTGTAGTAAACAATTTTCTAATATAGATGATGTAATAGACCATCTAAGTACTAATCATGATTTAGAATATGTATCTAATGTTAAGATTTATTTAGAAACTTTTGATTTACAAAGTTTCACTTGTGCCTGTTGTCAAAAATGTCATAAAACATTTTTGGAATTACAAAAACATTTTACTAGTAGTCATGCGGTTAAATATTCAAATTGTCTAAAATGTGGAGTAAAAAATAAATCAAAAGAGGATTTAAAACAACACATGCAAGAGTACCACGCCCCTGGTAAATTTAAATGCGATACTTGCGATTCTACTTTTACAACTTTAGAGGGAATTGATTTTCATAAAGATTTTTTCCACGATACTGTTTGTGAGATTTGTACAGAAGTTTTCCCGACAATAAAATTAAAATCAAAGCACTTTACTTTAAAACACCCTGACCTCAAATGTTTTGCTTGCTCTATGATATTTAATAATAAGACAGATTTAAGGAAACATGGAAAAAATTGTTATGTTAATGATGTTAAAAACAATAAAACCGTAGAAGTTTCTAGAGATGATTTCAAAATTTTGAGAAAAAATATGTTTCAAATATTGAGCATGTCGTCTATAATTCCTTTTAAATGGTATATGAGTAGATATCGTTGCTATTATTGCAAATTAAACTTCTTTAACACCAATGAGTTGAGACAGCATGTTGTAAAGAAACATGAGGAGTTTGAGTTAAAACATTTTAGACGTTGCAAAGGTGAACAGGGTGAAGTTAAAGTCGATATTTCTTCTATTCTCTGCAAACAATGCCCCTCTAATTTTGATAGTTTAGACAGTTTAACAGAACATTTAATAGCAGAACATAATATGGATTATGACAAATCTGTTGGAACATCATTCCAAGAATTTAAACTTAACGGCAAAGAAATACCCTGTTCTTTTTGTACTGAGAAGTTTGCATTTTTTGGCAATATTTTAAAACATATAAATGAAAAGCACTTTGAGAAGAACTTCGTTTGCACCTATTGTGGATTGTTTTTCTGTAGGGAAGTAAATCTTAGAGCGCATATAAGTTATAAACATGGCGTAGCAATACAATGCGCCACTTGTTCGGCAGAGTTTATAAATAAACATAAGTTACTTTTACACATGGCTAATGACCACGGAGAAAAGATTTCCAAATGTACTCTATGTCTGGAAAGCTTTACAAGTCCATACGTTCGAGCCAAGCATATGGCGGTAAAACATAATTTGCAGTACAAATGCAAATTTTGTAAGAAAGTATTTGTTAAGAATTCTATCCTACAGAAACATATTTTAAAAAATCATGCCAACGAAGAATTTATGGAAGCTTCTACATCCGCTTCAATTGATACGCCGTTCCTGAAGGAGGAACTTGAAATTGAATATGATCCTGATTTCTTGTCAGATTTACTGAACGACGAAGAAATGCCAAATGACGATGTATCGATTGCAAAAAGTGTTGGGGAAACGAGTCGGAGAAAAGTTAATATTCAATTAGTACTAAACATGTCTACGGCTATGCCTTTCAAGTGGTTTTTAAGTAGTTTTCGATGTTTCTATTGTGCCAAAAACTTTAATGATCCTGAAGATTTAAAGGTACATTGTTCTAAAGAACATTTTGATTATTATGACATGAAAAAAGCCATGAAACGGTATAAAGGCGAGAACATAACTGTCAAAGTTGATGTAACTTCGCTCTCTTGTCGGATTTGTTCCGCTGCAATGCCCGGTATAGAAATACTAATTGATCATTTGATTGCTGAACACGAAGCCGTTTATGACAAGTCCCTCACTGATTGTTTCGTGTCATTTCGTCTCATTAAAGATAACATGGCTTGTTTAATTTGTGGTACAAAGATCAATACAGTGGAGGACAAATATAAGAAAACTGAGCAAGCGCGAAAGGTTTTGATTAAACGACAAAACGTGGAATATGTCCTCCAGTACAGTAACGTCACACCCTTCCTCTGGTACAAAGGAAGGTACAGATGTTTCTATTGCATTGAACCTATAAAAGACCCAGATCAGCTCCGGGAACATACAAATAATACCCACAAATTTGAGAATTTAGAACTCGTTGTGCACGACCGTCTAAAAAACAACAGAAATAAAGATGCAGCTGTCAAAATAGATGTTCTTGACATGTCATGTAAACTATGTGCGAAACCCATTGCAAATTTAGATCAATTGATTCATCATCTGATCATAGCGCACGACGCCGAATACGATATGACCATCCATAATTGTCTTCTGCCTTTTAAACTGCATAAAGATTCGCCATCTTGTCCAACTTGTGATCAGAAATTTGTTTCGTTTGAATATCTCCTGAGACACGCCAACAAACACCATTTGCAACATAACTACAAATGTGAAATATGCAGCACTAGTTTTCAAGGTGAAAACCATATGAAGATGCACAACAGATATTATCACCGAGACGGCGGATACACGTGCGACTATTGCGGAATCGGACTATCTAATTTATCTAAAAAGGTTTTGCACGAAAAGAATATCCACTTAGCTAATTTATCTACCTGTCCACGCTGCCCAGAAACATTCAAAAGTCCTTATCTTAAAAAACAACATTTGGCCAACGTCCATGCCGTTGAGGAATTAAGAATTAAATGTCCATATTGTAGCAAGGTGTACCCTCAAGTGAGTATAATGTCCCGGCACATGAGACGAGTACATTTGAGAGAGAAAAATGTCTCGTGCGAAATTTGTGGCGATCAGTTTTTTGGGCCTTACGATTTGAAATTGCACATGGTGAAACATAATGGGGAGAAAAAATATATTTGTACAGTTTGCGGTAAGAAATTTTCGAAAAGGAGTAATCTTAATACACATATGTTTGTACACACAGGGAAAAAGGATAATGTTTGTGAGATTTGTAGGAAGGGGTTTACGCATCATTTTAACCTGAAAATGCATATAAAAAATAAGCACTCTGAGTATATGTTAGTGGAGGAGGCTTCCGATGGGCGAATTGAAGTATTACATGGTGAAATTATTACTATGGAAGATTTAGAAGATTGTGCAATTACTTTATAA
Protein Sequence
MELNSIVVKESPGLCRCCLSEGCYKDLATEYPWMSETEVYADMLLECFDISITQNSEGPNGPKRLICEVCITRLRDACNFKKQVLNSEKKFVDMVARKHFQPKAMLVYEAHEPMKTEIDLEPMPGTSGDLEDVEYLEEDIEYVDDYREETIEDIQEQDITVSELEVKPKKSKKRSVEGKAEKKHKTQSTAINKYKGRIAGVHSSTSYLSTTKQNRLRKGNALLLLESSNAFAFKWQRQNYLCFFCRRNFNNYDVLKEHTESAHKNSSFKAAVKHLRSDEKVKIDITSLTCRICDTNIDNLNQLIDHLKTVHNVKFFDADYGVIPYKLQAEKFQCAICNATFQYFTKLNQHMNSHYGSYVCESCGKSFLSQDRLRCHALRHKSKFKCDNCPQTFNFMSQKVNHNALVHNKKISIKCFHCEATFTTYLQRKLHHKTEHNINIPEFICPVCNKVFHIMSRMKGHVKEVHTRERNFECLVCNQKFFSNAYLEKHMIRHHGEKTHECNICKKLYARKQTLRDHMLRTHNGKPLTETLWESLAIKRRHNLQLLFNFSSVIPFKWSKCYMCFYCDKTFKETESSDLRKHTKYHGECFPDNYIINQVVKCNKFVKVDVSELSCELCSKQFSNIDDVIDHLSTNHDLEYVSNVKIYLETFDLQSFTCACCQKCHKTFLELQKHFTSSHAVKYSNCLKCGVKNKSKEDLKQHMQEYHAPGKFKCDTCDSTFTTLEGIDFHKDFFHDTVCEICTEVFPTIKLKSKHFTLKHPDLKCFACSMIFNNKTDLRKHGKNCYVNDVKNNKTVEVSRDDFKILRKNMFQILSMSSIIPFKWYMSRYRCYYCKLNFFNTNELRQHVVKKHEEFELKHFRRCKGEQGEVKVDISSILCKQCPSNFDSLDSLTEHLIAEHNMDYDKSVGTSFQEFKLNGKEIPCSFCTEKFAFFGNILKHINEKHFEKNFVCTYCGLFFCREVNLRAHISYKHGVAIQCATCSAEFINKHKLLLHMANDHGEKISKCTLCLESFTSPYVRAKHMAVKHNLQYKCKFCKKVFVKNSILQKHILKNHANEEFMEASTSASIDTPFLKEELEIEYDPDFLSDLLNDEEMPNDDVSIAKSVGETSRRKVNIQLVLNMSTAMPFKWFLSSFRCFYCAKNFNDPEDLKVHCSKEHFDYYDMKKAMKRYKGENITVKVDVTSLSCRICSAAMPGIEILIDHLIAEHEAVYDKSLTDCFVSFRLIKDNMACLICGTKINTVEDKYKKTEQARKVLIKRQNVEYVLQYSNVTPFLWYKGRYRCFYCIEPIKDPDQLREHTNNTHKFENLELVVHDRLKNNRNKDAAVKIDVLDMSCKLCAKPIANLDQLIHHLIIAHDAEYDMTIHNCLLPFKLHKDSPSCPTCDQKFVSFEYLLRHANKHHLQHNYKCEICSTSFQGENHMKMHNRYYHRDGGYTCDYCGIGLSNLSKKVLHEKNIHLANLSTCPRCPETFKSPYLKKQHLANVHAVEELRIKCPYCSKVYPQVSIMSRHMRRVHLREKNVSCEICGDQFFGPYDLKLHMVKHNGEKKYICTVCGKKFSKRSNLNTHMFVHTGKKDNVCEICRKGFTHHFNLKMHIKNKHSEYMLVEEASDGRIEVLHGEIITMEDLEDCAITL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-