Basic Information

Gene Symbol
Jarid2
Assembly
GCA_947458855.1
Location
OX375839.1:5507453-5525257[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.5e-23 1.2e-19 71.5 0.1 7 89 804 883 799 883 0.93
2 2 3.3 1.6e+04 -2.6 0.0 57 85 959 988 951 989 0.60

Sequence Information

Coding Sequence
ATGCCGCGGTCGATGCGCTGTGGTACGCTCGGAAACGAAACGCGAGATGTTGCGCCCGATGCCGGTGCCGCGGTCGATGCGGTGCGGTCGCTCGAAAACGAAACGCGAGTTGCGCCGATGCCGATGCCGGGGACGATGCGATGCGGCATCCGTTTTCTCGGCACCGAAACTGGAAGTCAACCCGCATCGTTGCGCGGCATCTCTTACTGGGATCCGATGCCGGCATCGTTGATTGAAAAACGCCCACCTCTAATGCTCAGTCTTACCAAAAGCGAGCTTCTTTTAGCACGCTACTTAAAGGTCTTCAACCCTTTACCCTTTGCAGTTCATTGCCCTTCCTCCCAACCACACAATGGAACCAGCACCTGGGGCCTTAGAGAAAAATCAGGCGAGGCGACGTGTCGTGCCGCCCTCAATCAAAACTGTATAGACTTCGGCAGGAAAGTGTTAGCTCAACGTAAATTTGCCCAAGGGGTATTTGTGCCCAGTTCAGGAATTGAAAGACGTAATGAACCTACTCCAAATACAACCCGACCACCACCATTGGATAGGTCACAAAAAATTACTACATTTAATTTAAAGGCATCTCAATATTTGGACTTTGTCACTTTCCAGAATATTCATCGCCATGAGAGTAAATGGGACCGAGAGACTAGTGACGATCTTGAAGAAGATAATAATACAAATGACAATAGCAGCCGTAATGGTTTGACTTCCTCTAAAGAAATTAAAAGTTCATCATCTCCAGAAGTAACCAGTCTATCAAATTCACCAATTCCTAAAGAAATCCTTTCACAAGAAGCCATAGTCATGCTAAATAAACTTGATCTTGAAGCTAGTCTAAGTCTAAGATTTAACAAAATAAAGGACAAACGCAGTACTAGTGACAGAAGCAGCAGTAATTCGACCATAAAAAGAATCTCAAAACCATCACTTTTAATAAGAAAAAAAATTGCTAAAAGATTACAAGTAAAAAGCAACAAATTAAATTTGAGAAGCACTAGGTTACAGTCGTCTGGAACATCTACTCCCACAACAGATTCCTTTGACACAGAGAAGTCGATGAGACTTAGAAAGAGAGCTGCAGTAAAATTGACTTCTCGTTTAGTTAAGAAAAAGAAGATGTCTGAAAGTTTGTCTTCAGATTTATCTTCTGACGATGATACACCATTAAATAAACTATGTTCAATTAAAAAGATGAAAGAAAATACAATTAAAACCAGATTGAGAGAAGCTAATCTATCAAATAAAATGGTCATGAATAGAGAATTAAGAAAGAGTACGCGAAAACCAACTGCCAAAGCAGTAGATATATTGGATGTACTTTACAACAGAACCGAAATTCAAGACTGGGTTGATAAAACTATTTCTGCTACTAAAAGCGATGTTTCTAATAAAAAGAATGGTACAAGCACTGATACTACATCAAATTCCGATGATTTAGATGATAATGCACCTCTTCGGAGTTTATCGCCGCCCTCTTCGATGCCTTCTACGGTCACACCACCATGTGACGATTTACCTGCAACTTCAAATACATTCAAAATGCCTCTGCCAGTAAGTGTAAAGGCAAAGAGGAAGAGTTCAGATAAATCAAATGATCGCTGCCCATCGCCGTGCCCTTCGAACAGTATTCAAAATGTTAGAACTCTTGACGATATAGGGTCTATAACTTTGAATTATTGGCAAAAAATGTGCAAAAATTGTCATATTTTAGATAAAATTCGTGATCAAATGCATTCAATTGTCGAGAAGAAAAATAAAGACGCGGAAGATGTATATAACTTTCAATGTGACAGTGATTCAGATAATGAAGCGCTTATTAATTACCGCCATCGTATGCGTACACCACCCGAGAACCATAGTTTATATTTGGATCTTTTTGAAGAGAATTCTCCATATATTATACAAATTATGAATTGCAAACAACTAGATAAGTCAATGATGAGTGCGAGAATACTTCCTCGTTCACAAGTTGATCCACATTTAATTAAGCGTAATGCCGGGGACTCACTTACCAATCATACATTCCTGAAGGACATTCTAAGTACATTGAAAGGAGATTCAAAGCCAGAAGAAGAAAATATACCCCCAAAAAAGATTGAAAGACCGTTTATAAGAAGTCACAAAATGAAGTCTGAAAATAATTGTGTATTTCCCCGACCTTCTCAAGATGCTACAATGGTTGAAGCCCCTGTTTATAAACCCACTGCTGAAGAGTTTGAGAATCCGTTAGTGTACATTGAATCTATAAGATCTGAAGCTGAGAAATTTGGAATATGTAAAATAAAACCACCCGTGGATTTCAAACCGACATGCAATGTTGTTCCTGAGGATATGAATTTTACATCATGTAATCAATATATTTGCAAAATGTATATGAGATGGGCTTCGGCTTCCAGAGAAATTTGTGCTATAAAATCATACTTGGCTACACAGAATGTGGTATTTAAAAGACCACCTTTGATTGACGGAATTGAGGTAAATTTAGCCAAACTTTATCACAAAGTACAAAGAATGGGAGGATTAAAAGAGGTGATTGAAAAGAAGAAATGGTCTAAAGTAGCCGAAGAAATGAACTATTCTAAATCTAACAACATCGAAACCAAACTTGATAGAATTTATTGCAAATATCTTTTACCATATGACACACTGACTTGCAAAGAACGTCAAGATATAACAAGAAAAGTAGAAAGTGAATGGAATAAACGTTTTAACAAAATGTTATTTCGAGCTAGGAATCCACTGTATCGACAAATGAAGTTACTCGGCGAAGTGACATCTGAGGACGAAGATGATGACGAAATGACTTGTTTGGATGAAACTGAAGACTGTGTACTTCCTGGACGTTATATGAACATAAAAACTTTTAAAAATATAGCCCAGCGAAGTATGGAAGTAAATTTTCCCAACAATCCACATCCCAGCACTTCACAAGTAGAGCAAGCTTATTGGGAATATGTTTTATTTGGCGGAGAACATATTTGTGTGAATACTGCGTCCATCGATACCGGAGAAAAAGGCTATGGGTTTACGAAAAATAAAAGTGATTCTTATTCGAAACACCCATGGAATTTGAAGGTTCTAAGCAATAACCAAGGTTCAGTACTCCGTTCTATGGGCCCAGTACTAAGTGCCACTGTACCGGCCTTACATTTAGGGATGGTATTTACTACCAGCTGTTGGCACCGAGACCCTCATGGCCTACCATGGATCGAGTATTTACATGAAGGTGCACCTAAAATATGGTACGGAATCCCAAACGATTGGAGTGAAAATTTTCGCAAAGCCGTAGAAACGTTAGCCCCTGCATACTGTCAAAATAAAGCAATATGGCTGCCATCTGACATAGCAATGTTTCCTCCAAAACTGCTTATAGAGAACAAGGTTTCTTTGTCTAAAATTACACAAAATCCCGGAGAATTTATCGTGGTTTTTCCTAAGGCTTACAGCTCCTCCATTTGCACTGGATTCACTATTTCTGAAAGTGTTTATTTTGCACCCCAAAACTGGCTTATGACTATGCAAAATGATTTTCAGGATGTACGCGACAGTTGCGAACCAACTATGTTTTCGCTAGAGCATTTGTTAATATCAATCGCCAACGACCCAAGATGTTCCCAAGCTGTCAAAATTCAAGTCCATAATACTTTGGATATCATACTAAGAGATGAGCTTATTTACCGACAATCTATTGACAAGTATGGGATGTCTATGAATATATACAAGCAACCACCTAAAAAGAAAAGTTTCTTGTGGAACGTCGGCGAACACACTGAATGTGATGTCTGTAGAAGAACATTGTTTTTATCTAAGGTTTCTGGAATAATTGGGAAGAAATCCGACTTATGTCTGCAACATGCCGTGCGTTTACTGGAAATGCGAACCCGGGCTCAGCTTGAGGAGATGAAAAAGGAAGTTAGCGTAGTTTTGTTCTACAGCGAGGAGGTTCTCGATGACCTTATGAAGTCACTAAGGCTAAGTATTATGTGA
Protein Sequence
MPRSMRCGTLGNETRDVAPDAGAAVDAVRSLENETRVAPMPMPGTMRCGIRFLGTETGSQPASLRGISYWDPMPASLIEKRPPLMLSLTKSELLLARYLKVFNPLPFAVHCPSSQPHNGTSTWGLREKSGEATCRAALNQNCIDFGRKVLAQRKFAQGVFVPSSGIERRNEPTPNTTRPPPLDRSQKITTFNLKASQYLDFVTFQNIHRHESKWDRETSDDLEEDNNTNDNSSRNGLTSSKEIKSSSSPEVTSLSNSPIPKEILSQEAIVMLNKLDLEASLSLRFNKIKDKRSTSDRSSSNSTIKRISKPSLLIRKKIAKRLQVKSNKLNLRSTRLQSSGTSTPTTDSFDTEKSMRLRKRAAVKLTSRLVKKKKMSESLSSDLSSDDDTPLNKLCSIKKMKENTIKTRLREANLSNKMVMNRELRKSTRKPTAKAVDILDVLYNRTEIQDWVDKTISATKSDVSNKKNGTSTDTTSNSDDLDDNAPLRSLSPPSSMPSTVTPPCDDLPATSNTFKMPLPVSVKAKRKSSDKSNDRCPSPCPSNSIQNVRTLDDIGSITLNYWQKMCKNCHILDKIRDQMHSIVEKKNKDAEDVYNFQCDSDSDNEALINYRHRMRTPPENHSLYLDLFEENSPYIIQIMNCKQLDKSMMSARILPRSQVDPHLIKRNAGDSLTNHTFLKDILSTLKGDSKPEEENIPPKKIERPFIRSHKMKSENNCVFPRPSQDATMVEAPVYKPTAEEFENPLVYIESIRSEAEKFGICKIKPPVDFKPTCNVVPEDMNFTSCNQYICKMYMRWASASREICAIKSYLATQNVVFKRPPLIDGIEVNLAKLYHKVQRMGGLKEVIEKKKWSKVAEEMNYSKSNNIETKLDRIYCKYLLPYDTLTCKERQDITRKVESEWNKRFNKMLFRARNPLYRQMKLLGEVTSEDEDDDEMTCLDETEDCVLPGRYMNIKTFKNIAQRSMEVNFPNNPHPSTSQVEQAYWEYVLFGGEHICVNTASIDTGEKGYGFTKNKSDSYSKHPWNLKVLSNNQGSVLRSMGPVLSATVPALHLGMVFTTSCWHRDPHGLPWIEYLHEGAPKIWYGIPNDWSENFRKAVETLAPAYCQNKAIWLPSDIAMFPPKLLIENKVSLSKITQNPGEFIVVFPKAYSSSICTGFTISESVYFAPQNWLMTMQNDFQDVRDSCEPTMFSLEHLLISIANDPRCSQAVKIQVHNTLDIILRDELIYRQSIDKYGMSMNIYKQPPKKKSFLWNVGEHTECDVCRRTLFLSKVSGIIGKKSDLCLQHAVRLLEMRTRAQLEEMKKEVSVVLFYSEEVLDDLMKSLRLSIM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-