Basic Information

Insect: Monomorium pharaonis
Gene Symbol: -
Assembly: GCA_013373865.1
Location: CM023800.1:1388241-1391720[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0033 0.53 11.6 0.4 1 23 125 148 125 148 0.90

2 12 0.006 0.97 10.8 4.7 2 23 271 293 271 293 0.91

3 12 4.8 7.7e+02 1.7 7.6 3 23 442 463 441 463 0.95

4 12 0.0061 0.99 10.8 0.4 1 23 514 537 514 537 0.96

5 12 0.0012 0.2 12.9 0.4 2 23 585 607 584 607 0.96

6 12 0.00059 0.096 14.0 0.1 3 23 630 651 628 651 0.93

7 12 0.0062 1 10.7 3.6 2 23 703 725 702 725 0.96

8 12 0.084 14 7.2 4.2 3 23 740 761 738 761 0.92

9 12 0.00021 0.035 15.3 0.1 2 23 808 830 808 830 0.94

10 12 0.32 51 5.4 0.5 1 23 909 931 909 931 0.97

11 12 0.014 2.2 9.6 2.4 2 23 945 967 944 967 0.93

12 12 0.0055 0.9 10.9 0.8 1 23 1040 1063 1040 1063 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0033	0.53	11.6	0.4	1	23	125	148	125	148	0.90
2	12	0.006	0.97	10.8	4.7	2	23	271	293	271	293	0.91
3	12	4.8	7.7e+02	1.7	7.6	3	23	442	463	441	463	0.95
4	12	0.0061	0.99	10.8	0.4	1	23	514	537	514	537	0.96
5	12	0.0012	0.2	12.9	0.4	2	23	585	607	584	607	0.96
6	12	0.00059	0.096	14.0	0.1	3	23	630	651	628	651	0.93
7	12	0.0062	1	10.7	3.6	2	23	703	725	702	725	0.96
8	12	0.084	14	7.2	4.2	3	23	740	761	738	761	0.92
9	12	0.00021	0.035	15.3	0.1	2	23	808	830	808	830	0.94
10	12	0.32	51	5.4	0.5	1	23	909	931	909	931	0.97
11	12	0.014	2.2	9.6	2.4	2	23	945	967	944	967	0.93
12	12	0.0055	0.9	10.9	0.8	1	23	1040	1063	1040	1063	0.98

Sequence Information

Coding Sequence: ATGTCATCGAGCGTGACATTGTCGTACGAGTCTACGACGATGGCGGAGGCGACAGAGCTGGACAGTGACGGTTCGAGCTGCGGCGAACGTGACGTCTGGAAGCGCGTTCGTGGCGATTCCGTCGACATCGGGCCCAAAAAGCGTCGAAAGCAGACCACGCCGGTAAGAGTCTCGTCTGGTCTCGCGGACGTACATGAGGATGCGCGCGTGGACGAACGCGAGGACGAGGCCGTCGAAGGTAAGCCGTCGTCGCAATCGCCGTTGCTGAGCAACGACCAACACGACCAACAACaacaccaccaccaccaccaccaccacctccATCACCATCACCACTCGCCGTCGTCGAAAGACGAGAACCTGAACAACGAGTTTCGCTGCCAGCACTGCGGCCGGCTCTTCGACAGCGACGAGACGCTCAATGTCCACGTGGACGGCGAGCACGGTGGCGCGGGTCAGGCGACGCCGGTTGTCGCCATCAAGGTAGAGCCGGCGCAGCAGCTGGATCCAACTAACGAGAGTCCGGTTAGCCTTTTAAGCGTTAAGAACTTCGCGACCACGTGGCTGGCGTCCGGCAGCCAGCAGCACGTGCAATCGCAGACGCAGATGCAGCCGCAGAGCGATGAATCGTGGTCGAGCGGCCCGGTCAATCAGATCGTCACGATGACCAATCATTTACAGGCGCTCTCGAGTTTTCCGGGTGCCCTCGCGCAGTATCTACCTCTGCCAAATTTTCCCCTCACCGACCCTCAACTCCCTCGATCCTCCCTTGCCGGTTCTGTGCCGATCAAGATCTTCAATCCGGACGCGTATTGTGACATGTGCAACAAAGAGTTTTGCAACAAATATTTCCTGAAGACGCACAAGGCCAACAAGCACGGAATCTACGTCGACTCACCGGCGCCAACCATGGATTCGGTCAATGTCGTTGGCAGCAACGTGTTCGGCCCTACAAATTTCCACGCGAGTAACGCGAATGTGAAACTGGAGCCGCCGGCGACTCCGCCGCAGAAACGTTTCCGCAATGAAGATCTCGGGAGGAAGCACAACAAACCGAAAACGCACGAGTCGCTGCTGGATCAGCAGATTGCGGACGGCCAGCAGATCTCTGTGTCGCAAAACGAAGAGGATCGAGTGACGCCGCGTGACAGCCCCAGCGGCATGGAGGCACTCGTAAAGCAGGAATACGGCATCGAACAGGAGGACGCGACCTTCATGCCAGCTCCAAGACACCTGTCGCCCCAGTCTAGTCAGCAAGCACGCGAGTCCGGCTTCAGCGCCGATCTTTTACGCCGCCTGGGTGTTTTAAATCCCGAGGCATTCTGCGAGATCTGCTGCAAAGAATACTGCAACAAGTACTTTCTGCGTACGCACAAAATGAAGCGGCACGGCATCGTCGTGCAGGATACCGAGAGATCGCCCAGCAATCCTGGGACAGCCGTCGCCACCTGGCACCAGGTGCAGACAAGTCCGTTGAACTTGATTGTGTCCGAAACCGCCGCTACCGGCGCGGAATCCAACGATCGAAGCAACGAGGAGTACGAGTGCAAACTCTGCGATATTCGCTTTCAAACGATCGGTCTTTATCAGGCGCACAGCAAGAAGATCCACGAGAGCGAGGAACGCAGTTCGCCAAAGCAAGAGTACGACCTGGATAGCTCCGAGCAGCGCACCGACTCGATATCAGAGGACCTTCAGAAGTTGCAAACGATGATCATGCAGCTGAACGGCTTAGATTCTGGTAAGGGATTATCCTGTGCCGTCTGCAGCAGAGAATGTGATTCGAGATCGGCCCTGCGCGTTCACATGGCGACCGAACACGGTGTCGCCGGTGATGAAGCCACGTCGTCGCCGCAGAAATCACCCACGGCCATCACGACTATTTTCTGCACTCTCTGCGAGAAGGATTATCCCAGCCAAGACGCCCTAAGAAGACACATTAGCGAGGAGCATCAACCCATCGTGTCTACCGCTATTACTCTGCCGACACTTCCGCCAACGGTAATCGCCTCTTCCGCCAGTTCGACGCCGACCAGTCAGACTCCGAGCGGCCAAACAACGACGGTGACGGAGAAGAAAGTGACGTCACTGACCCCCACGTCGAGCTACTGCGAGATCTGCAACAAGGAACTGTGCAACAAGTACTTCATGAAGACGCACATGCAGCGGATGCACGGCATCGAGATCGAGAACGGCGCGCAGATCGGCGGAGTCATCTGCAACATCTGCAACAAGGAGCTATGCAGCAAATATTTTCTGCGAGTTCATAAGCACAACACTCATGGAATCGTCGATGAGAACACGTCGGGATCGGCGTCAAACAAGCAAGAATCTTATGACGTTCCTAGCGCCGAGGACTCGACTTTAAAATCGGAACAATTAGGAGATCTTAGTCATAGATATTTCACACATTTCACCGAGGTATGTCCAATCTGCAGTCGAAGGTTCCGTAGCATCAAGTGGCTGAAGGCTCACCTGATGGGTGATCATGGCAAAGTAGGAATCGACAAATGGCGCGAAATGGAACAACAGTATCAAGCGACGTCCAAGACCAGCGGCAGAAGCGTCGCTTCGGCGAAGAACACGCAGCAAGTGTCGAACCTAAAGATCCCCAATGGATTCGAGGTCGCTCATCAAGTCAAGCCTGTCGATTACACGAGTCTAGGAAATCAAATGCTGTCAAATCTCCTCGGTTCCTCGTCCGAGGAGCATCAGTTGAAAAACTATCGCTGCGGCTACTGCAGCTTTACGACCCCTGTGCTACCCTTCCTCTTTCTTCATGAACGATCCCACGTGAACCCTCAAGAAAATCTCGAGGGGGATCGAGCGCTGCAATGTCCAATCTGCTCGCACGACTTCCATCAGCCGGAGCTGCTTCATCAGCATCTGCTCGCCAAGCATCAGTTCCCCTCTCTGTTGTCGCAGTTTCAGCATCCTCTCATGAATAATTTTAGGTCGGACATCGACGTCAAGACGAACGACGTCAAAGACAGAATTGATCCGGATACAAAAGACGATCGTGTAAGAAGCAGTCCGCAAATCGACCGGAACGTTCCCGAGGCCGCGAGAAATCAGCGGCAGGACGACACCGCGGTGCAGGTGACACCTCAAGGCGTGTACAAGTGCGCCCAGTGCGGCTACGCGACGACGAATCTGAATCGCATCAAGAAGCACGTGCGGAAGGATCACAAAACGATAGGCGATCCGACGGAAAGCGTGATCGCCGAACTCAGCAAGACCCTGAAGGACGTGGCGAATAAGCAGAAGATGCCGGCCTGTTACGCGATGCCACAGGACATGAACTCGAATCCCGACAAGACCATCATGCAGCCGTTCCTGATCGAGGAGCAGGATCATCAGATGCAGGCGGGCGCCGAGTCTAGCTCAGCGAAGAGATTCGCGCCGGCTTTGGTCTACTTGCCGGTCAAGTCCAGAATCAACAACGTCCTGACCGCCTCCTTCACTCTAACTCCCGCCTga
Protein Sequence: MSSSVTLSYESTTMAEATELDSDGSSCGERDVWKRVRGDSVDIGPKKRRKQTTPVRVSSGLADVHEDARVDEREDEAVEGKPSSQSPLLSNDQHDQQQHHHHHHHHLHHHHHSPSSKDENLNNEFRCQHCGRLFDSDETLNVHVDGEHGGAGQATPVVAIKVEPAQQLDPTNESPVSLLSVKNFATTWLASGSQQHVQSQTQMQPQSDESWSSGPVNQIVTMTNHLQALSSFPGALAQYLPLPNFPLTDPQLPRSSLAGSVPIKIFNPDAYCDMCNKEFCNKYFLKTHKANKHGIYVDSPAPTMDSVNVVGSNVFGPTNFHASNANVKLEPPATPPQKRFRNEDLGRKHNKPKTHESLLDQQIADGQQISVSQNEEDRVTPRDSPSGMEALVKQEYGIEQEDATFMPAPRHLSPQSSQQARESGFSADLLRRLGVLNPEAFCEICCKEYCNKYFLRTHKMKRHGIVVQDTERSPSNPGTAVATWHQVQTSPLNLIVSETAATGAESNDRSNEEYECKLCDIRFQTIGLYQAHSKKIHESEERSSPKQEYDLDSSEQRTDSISEDLQKLQTMIMQLNGLDSGKGLSCAVCSRECDSRSALRVHMATEHGVAGDEATSSPQKSPTAITTIFCTLCEKDYPSQDALRRHISEEHQPIVSTAITLPTLPPTVIASSASSTPTSQTPSGQTTTVTEKKVTSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTSGSASNKQESYDVPSAEDSTLKSEQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLMGDHGKVGIDKWREMEQQYQATSKTSGRSVASAKNTQQVSNLKIPNGFEVAHQVKPVDYTSLGNQMLSNLLGSSSEEHQLKNYRCGYCSFTTPVLPFLFLHERSHVNPQENLEGDRALQCPICSHDFHQPELLHQHLLAKHQFPSLLSQFQHPLMNNFRSDIDVKTNDVKDRIDPDTKDDRVRSSPQIDRNVPEAARNQRQDDTAVQVTPQGVYKCAQCGYATTNLNRIKKHVRKDHKTIGDPTESVIAELSKTLKDVANKQKMPACYAMPQDMNSNPDKTIMQPFLIEEQDHQMQAGAESSSAKRFAPALVYLPVKSRINNVLTASFTLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423182;
90% Identity: iTF_01354939; iTF_01355740;
80% Identity: -