Mpha019972.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monomorium pharaonis
Gene Symbol
zld
Assembly
GCA_013373865.1
Location
JABXFI010000021.1:563666-566809[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.2 33 6.0 3.8 1 23 26 49 26 49 0.93
2 7 0.0003 0.049 14.9 0.4 1 23 212 235 212 235 0.97
3 7 0.0019 0.31 12.3 2.9 1 23 451 475 451 475 0.92
4 7 0.00011 0.018 16.3 5.2 1 23 885 908 885 908 0.97
5 7 0.0046 0.74 11.2 2.8 1 23 914 936 914 936 0.94
6 7 3e-05 0.0048 18.0 5.8 1 23 942 964 942 964 0.98
7 7 2e-07 3.2e-05 24.9 2.3 1 23 970 992 970 992 0.99

Sequence Information

Coding Sequence
ATGAGTGAGATGACGAGTGCCGTCGAGacgcaacagcaacagcaacagtaCGTAGGCGGTAGCTCTAATGCGGAGCACCACTGCAAGCCTTGCGGTGTCAATTTCGACAGCGAGAAGAGCTTGGAGGTGCATATGCACTACcagcataataaaaattcgttaAATCAATGGCCCAATAAGGCACAGCAGgaagaaagtaataataaccataGCAAGACTGGTAACCACAATAATCACGTGAGCGCCAGCCGCGACAGCGTGCCGGCGGATTCGAGCGAGCCGTCATCGATGTCGCCCTCTCAGGATCTAACATCCTCGCAACAACAAacacaacagcagcagcaacaacaatcGCAACAACAATCTCAACAGCCTGCCATACAGACAATTGTCTGTCAGCCGTACGATCATTTTCGAGCTCCAATGTTTAGCGAGAGCGGCTACTTTATGCAGAACGATCAAACTTACATCATGTCTCATCATTTTTCGCCATCACAGGAAGACGGCCAGAGCAACGGCGGTCGCGACAGTGGTTACATGCGCTATCCATATCAACCGTATCAACATCAGCAATTGTTTCCCTCGGAAACAATTCACGCGACTTCTAATTCCACCAGCCCACAAAGCCCGCCTTTTCATTGCGACAAATGTGGTGCCGCTTTTGAGGATGCGAATCAATTAGGTGAGCACACGAGAACGAATCATTTAGACTCACCTACCACGTATCCATCCGTACCTCAGTATCAACAGCTGGGTAACAGTCCTCAACAACAAGGCCAGCAATTACACTCATCGCCGCCTCTCTCAAATCAACCGCAACAAACCAGCTACGATTACAATGGACAGACGGTCAAGTCGGAGATAAAGCAAGAACAACCGGAGGAACAAACTGAAATTCTTGACTTAGATTCTCATAAGGTGCAAACGCATAGATACGAAGAGGAAATGATTAGGTtacagcagcaacaacagcagcagcagcaacaacagcaaggACTTCAGATGCAGATGCATCATCAACAAGTgatgcagcagcagcagtcgCAAAGAGTAGAATCGCTTCCGGTGAGTTCCATGTTGGGTTGGCCAACTATTCAAACTCACGATTATCATACAGGACATCCACCAATGGGTCCCATAAACAATATTCCACCTATCGCTGATCAGGATCAATATATACGCAGTCAACATATGCCCGTGGAGCACGGGCATCAGAATTCGCCAATAATCTCGAGCACACAACCGATGTCGGGCCATCAGATGTCGGCTGGATTCGTGCAACAAACGCCAAAAGCGCCACCGTTGGGAAATCAAAACTGGAAAAGCAACGAGGCGCGCCGTCCAAAGACATACAATTGCACTGCGTGCAACAAGTGGTTTACAAGTTCAGGACATTTGAAGAGGCATTATAATACTACGCTACATAAAAACGCTGTCAAGAATGGAAAAGAGCCCGATCCGGCAACTCTACCAATCAACGCTCATCATCATCCCCCTAGAGAGAATAGCACTGGTCATTCGACGAGTGGCAGAGGCGGCGGCGCTCCCGCGCGGTCTCCACCAGAATTATCATCTTCGCGGAGTCCCCCAAACTTGATGGCAGGTCCCTCGGGCGAGGCGACGAGGGGCCTGCTTCACACGCCCACCACGCTCTGCAACAACAATTccaacagcagcaacagcagcagcgaATCTTTAACAGCGGCCCTGgtacagcagcagcagcagcagcagcagcaactgGTCCATGCGGGAATAATCAATTCCCCGGTGTCATCGCCGCTGGCGGGACACCATCAGCAACAAATGGGTACAGCGCCTCACCAACTGGGTCttcagcaacagcagcaacagcagcctCACCTGTCAACGGGTTCGTCGGGCCAGCCGGTGCATCATTCCACGATTTCGCCCACCATGCCCCCACCGGTGGCATCGCACACCCTGAATTGCCCTTCGCCAATGGGTTCATCATCCCACCCGGTTCATCACATGAACTCGCCGCCCGGCTCGGGCCATCAGGCAATGACTTCGCCCACAGCGATGGGGGGTACTACGATGCCTCATCAACCGTACCCAAACGCCTTGCCCCCCCACGTTACAATTACTACCAGCACCCCGGCGGTCCCACTGGAATCTACCCAAACGGCTATCCTACACCTTACTATTGGTAACGAGCAAAACGAGCGGCCACGACATATGTTGCCCAGTTTTagaactattttaaattttacggaATTCGAATACGCGGTAGATCAAAACCAGACAGAGACCGTTAACGTGGGGGGGCTAAATGTGGAGGAGGAGATCACTCCTCAAGAGTCATTTGAATCTTCAGAATCAAATTATGACATATTTTCACCTTCGCGTTATGCTAAGCCATTTAGCAATGTAGACATGACGACGTTGCAGACAAATGACGTTGTAGACAATGTAACGCAAGATGAAAATGCAACAGTTACATTGTGCTATACACTTGAGCACGTTATCGAGAAAAACAACAATCATTTACCACATTTAGGACATGCGAAGGAAGATTTAGATCCAAATATCGGTTTGGACCTCAAGAAAAATCGTAAGGTCAAAGGCAGTACAAAGAAGGAATGTAATAAGATTATCACTACTGCTAATATCATCTCAGACGGTGACATACATAAGTGCGTTGATTGCAATAAGGTGTTCAACAAGGCCTGCTACTTGACGCAGCATATTAGAAGCTTTCATTCGGGCGAGAGGCCGTTTAAATGTAGCCAGTGCGGCAAACGGTTTCCAGACGAGGAGCAGCACAACAGGCACTCGACAATGCATTCGATGGCGAGAAAGCACAAATGCGAAATGTGCCCAAAGATATTCGCTCACAAAACTGATCTTAAGCGGCACCTTTGCATCCACACTGGTAAACGGCCCtttaaatgtgatatttgcgGCAAGGGATTCATCAGGCAAGATCACATGAAGAAGCATCAAGAAACACACAATAAGAAAATGCGACTAGAAAAACAACGGCAAGCTGCTCGGGTCTTCTCTCAACGAGTCAACCCTAATAATCCCCAACGGATCAATATCGTTACATCAATAACAAACGGAGCAGCACGgttgcaacaaaatatttcaagaatcaAGAAGTTACAgttagataattaa
Protein Sequence
MSEMTSAVETQQQQQQYVGGSSNAEHHCKPCGVNFDSEKSLEVHMHYQHNKNSLNQWPNKAQQEESNNNHSKTGNHNNHVSASRDSVPADSSEPSSMSPSQDLTSSQQQTQQQQQQQSQQQSQQPAIQTIVCQPYDHFRAPMFSESGYFMQNDQTYIMSHHFSPSQEDGQSNGGRDSGYMRYPYQPYQHQQLFPSETIHATSNSTSPQSPPFHCDKCGAAFEDANQLGEHTRTNHLDSPTTYPSVPQYQQLGNSPQQQGQQLHSSPPLSNQPQQTSYDYNGQTVKSEIKQEQPEEQTEILDLDSHKVQTHRYEEEMIRLQQQQQQQQQQQQGLQMQMHHQQVMQQQQSQRVESLPVSSMLGWPTIQTHDYHTGHPPMGPINNIPPIADQDQYIRSQHMPVEHGHQNSPIISSTQPMSGHQMSAGFVQQTPKAPPLGNQNWKSNEARRPKTYNCTACNKWFTSSGHLKRHYNTTLHKNAVKNGKEPDPATLPINAHHHPPRENSTGHSTSGRGGGAPARSPPELSSSRSPPNLMAGPSGEATRGLLHTPTTLCNNNSNSSNSSSESLTAALVQQQQQQQQQLVHAGIINSPVSSPLAGHHQQQMGTAPHQLGLQQQQQQQPHLSTGSSGQPVHHSTISPTMPPPVASHTLNCPSPMGSSSHPVHHMNSPPGSGHQAMTSPTAMGGTTMPHQPYPNALPPHVTITTSTPAVPLESTQTAILHLTIGNEQNERPRHMLPSFRTILNFTEFEYAVDQNQTETVNVGGLNVEEEITPQESFESSESNYDIFSPSRYAKPFSNVDMTTLQTNDVVDNVTQDENATVTLCYTLEHVIEKNNNHLPHLGHAKEDLDPNIGLDLKKNRKVKGSTKKECNKIITTANIISDGDIHKCVDCNKVFNKACYLTQHIRSFHSGERPFKCSQCGKRFPDEEQHNRHSTMHSMARKHKCEMCPKIFAHKTDLKRHLCIHTGKRPFKCDICGKGFIRQDHMKKHQETHNKKMRLEKQRQAARVFSQRVNPNNPQRINIVTSITNGAARLQQNISRIKKLQLDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01355689;
90% Identity
-
80% Identity
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