Basic Information

Insect: Monomorium pharaonis
Gene Symbol: salm
Assembly: GCA_013373865.1
Location: CM023795.1:6060971-6079420[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.8e-05 0.003 18.7 1.0 1 23 381 403 381 403 0.98

2 9 7.5e-06 0.0012 19.9 2.1 1 23 409 431 409 431 0.98

3 9 3.4 5.5e+02 2.1 3.3 3 23 797 817 796 817 0.92

4 9 3.3e-08 5.3e-06 27.4 0.6 1 23 823 845 823 845 0.97

5 9 4.6e-05 0.0074 17.5 2.6 1 23 855 877 855 877 0.98

6 9 0.0093 1.5 10.2 3.2 2 23 1172 1193 1171 1193 0.97

7 9 1.9e-07 3e-05 25.0 1.4 1 23 1199 1221 1199 1221 0.99

8 9 4.4e-07 7.1e-05 23.8 2.1 3 23 1332 1352 1330 1352 0.96

9 9 1.5e-07 2.4e-05 25.3 0.9 1 23 1358 1380 1358 1380 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.8e-05	0.003	18.7	1.0	1	23	381	403	381	403	0.98
2	9	7.5e-06	0.0012	19.9	2.1	1	23	409	431	409	431	0.98
3	9	3.4	5.5e+02	2.1	3.3	3	23	797	817	796	817	0.92
4	9	3.3e-08	5.3e-06	27.4	0.6	1	23	823	845	823	845	0.97
5	9	4.6e-05	0.0074	17.5	2.6	1	23	855	877	855	877	0.98
6	9	0.0093	1.5	10.2	3.2	2	23	1172	1193	1171	1193	0.97
7	9	1.9e-07	3e-05	25.0	1.4	1	23	1199	1221	1199	1221	0.99
8	9	4.4e-07	7.1e-05	23.8	2.1	3	23	1332	1352	1330	1352	0.96
9	9	1.5e-07	2.4e-05	25.3	0.9	1	23	1358	1380	1358	1380	0.98

Sequence Information

Coding Sequence: ATGTACGAACAAGACGAAGTCGAAGGACCCAGTGGAAGCTACAGATGTATAAAATGGAGTATAATGGATCCATTGAGGCTACGTACTCTCAGATTGAAAAAGGACTACGAGTTACCACATCGACAAGTTCCCAgAGAAGAAAATGACTTTACATCAGATGGAGAAGAAAGCGGGGGTGGGGGAGGAGGTGGTGAGGAAGCCGTGGATCTCACAGCGACGAGATCTCATCAGGGTGACGATGATCCTATGGAAGAGGATGAGGAAGAAGGTATTGACGAGCAAGATGAACAGGATGAGGACGAGGAGGGCTCGCGTAAACAGATTCATCACCGACAGGACGCGGAGAACAATAATAACTTTGTGGAGAGCGGCCTACCTACCGCTATATTCCCACCTGCTGGAACTAGTCACGTCACTCTCGAAGCCctacaaaatacaaaagtgGCGGTTGCCCAGTTCGCTGCCACTGCCCTCACTGGGGCAGACAGCGAAGCGGCGCTACAAGACCTGGCATTTCTGGAGAACACGCTGTGCACCCTTCAGAATCAACAGGTATTACAATTACAGCTGATTCGACAACTTCAGCAGCAATTATTGATCACTCATGGGCAATCGGTAATGCAATCGTCAACGACGGAGCCAACCGATAGCAAAGAGACTTCATCGTCTCCTATTATTCATCCGAAACCATTATCGAGTCTCACATCACCTCCTTCTTCTCGTCCGCCGAGTCATCATCAGCAAACGTCACCGGCGCCGCTGACGCCGAATCTGCTTCAGGAACGGCCAACCTCGACGAGCAGCGCCTCTCCTTTAAATCTACCCCTATCTTCGTCCGGCGCGACATCAACCGTCATCACGACCACCAGCAGCCAAATACCGATGCCGCATCAAATGCCGCCACTTTGCTCGATAAGCGCTTCCCTCGCTTCATCGATCATAACGAACACCGATCCGCCGCCGCTTCACGAACCAAACACGCTGGACATTCTTCAAAAGCGTACGCAGGAGGTATTGGATAACGCGAGTCAAGGACTGGCCAACAATTTGGCTGACGAGCTCGCGTTTAGAGGCAAGGGCTCGCGACTATCTCCTTACGATTCGAAATCAAGCGGTGGTCGCGGCGAGCCCTTCTTCAAGCATCGATGTCGCTTCTGTGGCAAAGTCTTCGGTAGCGATTCGGCGCTACAAATCCACATACGATCCCACACAGGTGAGCGACCCTTTAAGTGCAACGTATGTGGCAGTCGGTTCACGACCAAGGGCAACCTGAAGGTCCACTTCCAAAGGCATACGGCCAAATTTCCACACGTTAAGATGAATCCGAATCCCGTTCCAGaacatttagataaatatcatCCACCCCTCTTACAGCAAATCGCTTCTGGGCAGAGGCCGATGCCgtctccgccgccgccgccgccaccaccgtcCTCTCATCATCCCCCGTTTCATCCAGCAACAACGCACGGTTTCCTCCCGCCACAACCGCCCATACCTCTGAGTCTCACCTTATCCAATATGACGCCCCTTTATCGATCTCCAGTTATTAATCACCGGGACGATCAGGACGTGCCGGAGAATCTTAGTAAACCCATAACCACCGCTCCTCAGACGTCTCCCACTTCTCCCGCTGCTATATTGAATTCTCGTCATTCCTTTCACGACAATCTCCATCAACAACATCAAAAGCAACAGCTTGAgcaaagagaagaaataaaaatcgagcAGAGATCGCCTGGACAGGAACAGTACCAACAACGACCGATGAGCCGGGAAGGTGCCGAGCGAATAACACCAAAAAGAGAACCCGAAGAAACGGAAGAACCCCCTGAGGAAGAGAGCGAAGATTTTGAAGAAACCACGAGACGGTATCTCAATTCACCTCAATCCGTGAATCCACCATCCCAGCCTCAAACATACGAAGATTGTAGTATGGACAGCAAGATCAGTGGCCGTCTAGAGGGCGACGGAGAGATGGAAGTAGACGAGGAAACGGAGGAGCAACCTGAAAATCTTTCAGGGAGAGGTACGATCAATCGTTTGCCCCAACAGATCGTAGCATATCCGGGAGCATCGCCAGCCAGCAGTAGTGCGAGTAGCGGTAGTCTGCAAACATCTTTTGCCGGAATCTTATTTCCTGGTCCCCCATCTCATCACCAAATTCCTCATCTTCCTGTTACTACACAAGCGGGCTCGATTACGACAGGCGGAAATGAAATGATCGATCCAGCCAAGGATCCAGCGATTTATTCGAGTTTACTACCGCGGCCAGGCAGTAATGACAATTCCTGGGAGAGTTTGAtcgaaataacaaaaacttcAGAGACGTCCAAGCTGCAACAACTAGTCGACAATATCGAGCACAAACTGAGCGATCCTAATCAGTGCATCGTTTGCCATAGAGTGCTCTCATGCAAGAGCGCATTATTGATGCATTATCGCACTCATACCGGCGAACGCCCTTTCAAGTGTAAAATTTGTGGTCGCGCCTTCACGACGAAGGGCAATTTGAAAACTCACATGGGAGTGCACAGAGCTAAGCCACCACTGAGGGTATTGCACCAGTGTCCTGTATGTCACAAGAAATTCACGAACGCTCTCGTATTGCAACAGCACATACGTCTTCATACTGGGGAACCCACCGATCTTAGCCCGGAACAGATTCAAGCCGCGGAAGTAAATGAATTCCCACCCGGTTACCATCCACTGGCATCTTTTCTTCCACAAGGATTTCCATCGATACATCCGACTAGTGCAAGCTTCCCCTTAGGATTCCCTCCATCAAGGCAAGCGGCCCTTGAGCAACAATCGCAGGAAAGTGATGTCGAAGCGAAAGAGGACTCTCTGCATCAACGACAAAGATTTATGGAGGAGCACAGCGAAGAGACAGAAGATCAAGAGGACGAGGAGCAAGATCACAGAGAGGATGACGAAAGGTGCGAATTAAATCGCGATAGGCGTAGTGTCGATGTTGAAGAAGAGCACGATCATGAAAGCGAGGATATGTCCGAGCACAAAGATGTAACGCTTCCTATATTTTCGACTTCATTGGCGGCGCTTGAGAATCAAGTAAGGACCATCACGACGACAGCGACCACGAGTACGAACATGGCCAGGTCGCCATCCTTTCATCGGTACAACGGTAGTGAAAAGAGCACTAGCCCGCCGACTTCCGGGGCCCCGCTCGATTTGACACCCCGTGCTTCGTCTACGCCAGCGTCAGTGGCTTCCGCATCGCCGACACCGCCACCTCAGACCATGCCGCATCATCCACCGAATCCCTTCGGCATGTTCGCGGGTCTACTGCAAGCGGTCTCGTCTGCTCCTACTACCAGCACGATAGGCACGTCGAACATAAACAGCGTCACCTCGATGAATGCCATCAATCCGGGTAGCGGACCCGGTAGTGGACCACTAGCCTCGCTGACCACTTCGGCCGTACTAGCCGCATCATCGACCTACAATCCGCTCGGCCTAGCTGTCGGAGGCCCAGCAGTACGTGGCAACACCACATGTAAATTCTGCTACAAGACGTTTGCGTGCCAATCTGCATTGGAGATTCATTACCGGAGTCATACGAAGGAGCGACCTTTCAAATGCACCATATGCGATCGAGGTTTTTCTACGAAGGGTAATATGAAGCAGCATATGTTGACTCACAAGATTCGCGATATGCCGCCACATCTGTTCAGCGACCCCAAGCatcaacagcagcagcagcaacaacagcagcagcaacaacagcagcagcagcagcaacaacaacagcagcagcagcagccgccgcaacaacagcagcagcaagaTCGGGAAACCTCCAGAAGTCCAATGTGTGTCGACGATTCGAGCCTACCGCCTCCACCTCCACCACCTCCTCCACCCCCGCCGATGCCACCGACGTCCATCGACTCCGCGATTACGGTGAAGAGATCGCCGGAGGGTGATCTACCAGCACCGAAAAGACCAGCCAGCCTGCCGAGCAAGCATTTGTGCCAGATTTGCAATAAGAATTTCTCCTCGTCTTCGGCGCTCCAGATCCATATGAGAACTCACACTGGCGACAAACCATTCCGATGCACTGTTTGCCAGAAGGCGTTCACCACCAAAGGCAATCTCAAGGTGCATATGGGTACTCACATGTTTACCAACGGAACGTCGCGTCGAGGCCGACGGATGTCGTTGGATATACCTCCCCTGCCAATCACGCCCAAGGACTCGGAGTTCCTGCAACGGCGACCGGACCTTTTTTACCCATATCTTCCCGCGCCATTCCTTAACGGCGTCCAGCAGAAGCTGAACGAGATTTCGGTGATTCAGAGTAGCAACGGGTTACCGCCCCATTCCTTGAGCGCGGGCAAGTACGCGGCAAGCCTCTTTGGCTCGGTGTACGGTGCCGGCGGAGGTGGCTTTTCCCTGGATGGAAAACAACCGTTGGGTCCGACCAGTAACGGGCCTCTGGTGGATGGCAAGTCAGCGATACCCTCGGGATCCATGCTCTTCCAAACACCATCGCCCTCGCACTCGCCTGGGGCGTCGTCCAATGGCGGTAATCAGACGTCCGCCAGCGTGACTTGGACCGGCGATACTCTTCAACATCACTTCGACCGGGAGACACCGAGCAGAACCGAGAACAACGCCACACCGCCCACGGCGCGGCTGCCACCGCCACCGACGAGGGGAGAGGGATTAGCTGCGTGA
Protein Sequence: MYEQDEVEGPSGSYRCIKWSIMDPLRLRTLRLKKDYELPHRQVPREENDFTSDGEESGGGGGGGEEAVDLTATRSHQGDDDPMEEDEEEGIDEQDEQDEDEEGSRKQIHHRQDAENNNNFVESGLPTAIFPPAGTSHVTLEALQNTKVAVAQFAATALTGADSEAALQDLAFLENTLCTLQNQQVLQLQLIRQLQQQLLITHGQSVMQSSTTEPTDSKETSSSPIIHPKPLSSLTSPPSSRPPSHHQQTSPAPLTPNLLQERPTSTSSASPLNLPLSSSGATSTVITTTSSQIPMPHQMPPLCSISASLASSIITNTDPPPLHEPNTLDILQKRTQEVLDNASQGLANNLADELAFRGKGSRLSPYDSKSSGGRGEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPPPSSHHPPFHPATTHGFLPPQPPIPLSLTLSNMTPLYRSPVINHRDDQDVPENLSKPITTAPQTSPTSPAAILNSRHSFHDNLHQQHQKQQLEQREEIKIEQRSPGQEQYQQRPMSREGAERITPKREPEETEEPPEEESEDFEETTRRYLNSPQSVNPPSQPQTYEDCSMDSKISGRLEGDGEMEVDEETEEQPENLSGRGTINRLPQQIVAYPGASPASSSASSGSLQTSFAGILFPGPPSHHQIPHLPVTTQAGSITTGGNEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLSDPNQCIVCHRVLSCKSALLMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPGYHPLASFLPQGFPSIHPTSASFPLGFPPSRQAALEQQSQESDVEAKEDSLHQRQRFMEEHSEETEDQEDEEQDHREDDERCELNRDRRSVDVEEEHDHESEDMSEHKDVTLPIFSTSLAALENQVRTITTTATTSTNMARSPSFHRYNGSEKSTSPPTSGAPLDLTPRASSTPASVASASPTPPPQTMPHHPPNPFGMFAGLLQAVSSAPTTSTIGTSNINSVTSMNAINPGSGPGSGPLASLTTSAVLAASSTYNPLGLAVGGPAVRGNTTCKFCYKTFACQSALEIHYRSHTKERPFKCTICDRGFSTKGNMKQHMLTHKIRDMPPHLFSDPKHQQQQQQQQQQQQQQQQQQQQQQQQQPPQQQQQQDRETSRSPMCVDDSSLPPPPPPPPPPPPMPPTSIDSAITVKRSPEGDLPAPKRPASLPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMFTNGTSRRGRRMSLDIPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSSNGLPPHSLSAGKYAASLFGSVYGAGGGGFSLDGKQPLGPTSNGPLVDGKSAIPSGSMLFQTPSPSHSPGASSNGGNQTSASVTWTGDTLQHHFDRETPSRTENNATPPTARLPPPPTRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417805;
90% Identity: -
80% Identity: -