Basic Information

Insect: Monomorium pharaonis
Gene Symbol: -
Assembly: GCA_013373865.1
Location: JABXFI010000018.1:2637963-2643546[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.94 1.5e+02 3.9 6.7 2 23 285 307 284 307 0.97

2 19 0.032 5.3 8.5 2.2 1 23 356 378 356 378 0.97

3 19 0.26 42 5.6 0.6 1 23 427 449 427 449 0.97

4 19 0.066 11 7.5 0.2 1 20 498 517 498 519 0.91

5 19 8.9 1.4e+03 0.8 4.7 1 23 531 554 531 554 0.87

6 19 0.0039 0.63 11.4 4.0 1 23 559 581 559 581 0.98

7 19 1.4e-05 0.0023 19.1 0.6 1 23 628 650 628 650 0.96

8 19 0.00049 0.079 14.2 0.1 1 23 656 678 656 678 0.97

9 19 9.6e-05 0.016 16.4 1.4 1 23 722 745 722 745 0.96

10 19 0.00038 0.062 14.5 0.8 1 23 751 774 751 774 0.96

11 19 2.3e-05 0.0038 18.4 0.6 2 23 782 804 781 804 0.97

12 19 9.6e-05 0.016 16.4 0.0 1 23 812 834 812 834 0.93

13 19 0.064 10 7.5 0.3 1 20 896 915 896 915 0.97

14 19 0.00033 0.054 14.7 0.0 2 23 935 956 934 956 0.97

15 19 0.00012 0.02 16.1 4.4 1 23 969 991 969 991 0.98

16 19 0.00054 0.088 14.1 2.9 1 23 1013 1036 1013 1036 0.93

17 19 0.0017 0.28 12.5 1.1 2 23 1097 1119 1096 1119 0.95

18 19 0.00052 0.085 14.1 1.0 1 23 1139 1162 1139 1162 0.93

19 19 0.0019 0.31 12.4 0.3 2 23 1256 1278 1256 1278 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.94	1.5e+02	3.9	6.7	2	23	285	307	284	307	0.97
2	19	0.032	5.3	8.5	2.2	1	23	356	378	356	378	0.97
3	19	0.26	42	5.6	0.6	1	23	427	449	427	449	0.97
4	19	0.066	11	7.5	0.2	1	20	498	517	498	519	0.91
5	19	8.9	1.4e+03	0.8	4.7	1	23	531	554	531	554	0.87
6	19	0.0039	0.63	11.4	4.0	1	23	559	581	559	581	0.98
7	19	1.4e-05	0.0023	19.1	0.6	1	23	628	650	628	650	0.96
8	19	0.00049	0.079	14.2	0.1	1	23	656	678	656	678	0.97
9	19	9.6e-05	0.016	16.4	1.4	1	23	722	745	722	745	0.96
10	19	0.00038	0.062	14.5	0.8	1	23	751	774	751	774	0.96
11	19	2.3e-05	0.0038	18.4	0.6	2	23	782	804	781	804	0.97
12	19	9.6e-05	0.016	16.4	0.0	1	23	812	834	812	834	0.93
13	19	0.064	10	7.5	0.3	1	20	896	915	896	915	0.97
14	19	0.00033	0.054	14.7	0.0	2	23	935	956	934	956	0.97
15	19	0.00012	0.02	16.1	4.4	1	23	969	991	969	991	0.98
16	19	0.00054	0.088	14.1	2.9	1	23	1013	1036	1013	1036	0.93
17	19	0.0017	0.28	12.5	1.1	2	23	1097	1119	1096	1119	0.95
18	19	0.00052	0.085	14.1	1.0	1	23	1139	1162	1139	1162	0.93
19	19	0.0019	0.31	12.4	0.3	2	23	1256	1278	1256	1278	0.96

Sequence Information

Coding Sequence: ATGATGGACGAGGATGTGGTCGAGATCGAGAACGTGGAGAATGTCTGCAGACTGTGCCTTGCCACGGACGGGCCTAGGTCCTCGGTCTTCGCGACGGAGAAGGAGGATGACGAGAGGGAGGACTCGTCCGGCGTGCCGCTGGCCGATAAGATCCAGGCCTGTCTGTCGATTCAGatttcagCAACCGATAAGTTGTCAACGCTGATATGTGCAAATTGCGTAAAAAACGTCAATCAATGGCATACTTATAAAGAATCATGTTTGCGGTCTCAGGATAAGCTGCAAGAATGGCTGGCAAATCAATTGCATTTAAATCCTactGTTGTAACGATCAAGGATGAACCTATGGACATTGATTATGAAGATAATGTGGAAATAATCTCCGagattactaataatttagaaCAACAATCACAGCCAATTCAAACAGTGGAACATAATGAACCCAATGATGAGAAAGAGCAAGATAAAACTGATAACAATGATGCGAAAGATAACAACGAAGAACCAATTCCTGAACCAATTCCATCTGGAATTGTGGAAACGGAAAAGGAAACTGACAAGGAAGAAAATCAAACGGAAGAAAATCGAACGGAAGAAACTCATCAAGAAGATGTTCCTCTGCGCTCTATTAAATGCGAGCCGCAAGATGATGACGATACCGATTGTACCATAGAATTAGAATCCACGAATAGCAGTGAGTTATTAATGAATTCCATGTCAGTCgacgaaacggacacagtcaTGGAAGCCGATTCCACGCAGAAATCTAATTCGGTCGGCGCACCGGctaaaaagaaattcagaCGCGGGCCTCACACTCACTTTAGAGGAACGCGCGTCTTTAAGCAGAAGTGCATGCACTGCCAGATATTCTTGCACTCCAAATATTCATACATGAAGCACATGAACAGGTTCCACAGTAAAGAGAATGGTGTCGAGAATTTAGAGTCACAGAATGACGAGGAAGAGATGATCGAGGATTTGGAGGATGAACTGGTTAGCATGGAAAAAGATTCACCGCTGACGCAAGTCCAACAGGACATTATTAGCCAATTGAAAACTTTCTCTTGCTACTCTTGCGAGCAGACATTTAACGATCGACGTAGCACCCTTTCTCACATACGTCAGCATTTGCCGGATTTGAGGCCGTACACGTGTATCGCCTGTCTGACAGAATTTCCAGATCGATCAATGTATCAGCTACACTGCGGAGCTTCCTTTGAATGCGCTATGAAGATCGCCCTAGTCGTACCGAAAATCGGTAACGAGCGATACTTTACGTGCAACATGTGCCTGCGCTCAATGCCCGGAAGAAAGGAATTGCTCAGTCACTTGTCGAAACACTCTGACAAGCAGTATGAAGAGATGATGGGACCAGCGCGAGCCCCACCCAAGCTGAAGCCGATGGCGCCATTGTCATCCCCGACGAAAAACAGCAATAAAATAACTGGTGGATTACCTTATAAAAACGGCGATCCAACGCATAATCACGCCTGCGATCTGTGCGGCATGATCTATCGATATCGACCAAATATGCTTAAGCACAAGGAGATGTGCAAGCAGTTGGATCCAGAAAGCagaacattatataaatgcgTACATTGTTACATGACGTTTATTGTATTCAAGAAGTTTCACTATCACGTCACGGCAGATCACAAGAAGAAGGATTTTACTTGTGCTACGTGCCATTCCAAATTTCGATCGCCCAGTGATTTTCTGGCCCATCACGAGACTCATCGTGAGGCACAAAGCAATCAGCAAGTGCAGCATGACAGTTCAAACTCGCAGAATGCAGTTCAAACGCCATTGAAGGAACGTAATGCTTACGAAACAAATACCAAGTCTAAAATGAGTCCGCGAATATCAAgtgagaaatttaattgtccCCTCTGTCCCAAGAAATTTTCCACGAAGGTCGAATTAAATGAGCATCGGACTCTCCATCTCAAAGTGAAGATATACTCGTGCGCTATTTGTCGCAGTATGTTCAGCAGCGCTGGTGCCTTGGAGATTCACATGAAGGATCACGGTATTGATGACCCAAATGAAAGGAATGCCAATGTCTCTTGCGTAGAATACGGCAGCTTGAATGAGGACGTGGCGATTGATAAAGATTCGATGAATACTAGTACCGTCTCGGATCCTGGCAGTCAGAGTCACAAGTGTAGCGAGTGTGGTAAGGTAATGTCAAGTTATGCTAATCTCCGACGACATTTCAAAATCGCTCACCGGAACTCTAAGGTCTACGATTGTGCTGAATGCTCGCGAATGTTTATGCGTAAAGATCTGTACGAGAATCATATGCAGCTCAAGCACAACGGCAAGAAGACAATGATACAGTGTCCAGAGTGCCCTAAGAGTTTCGTCTTCCAAACGAACTTCTCTTATCATTTCCGTACCGCTCACCTCGAAAAATCGCAGAACGGTTACGCTTGTGATATCTGCGGCAAAGTCTTTAACGAAGAGGCATCCTTGAAAATACACAGAGGCTGGCACAATCGCGCCAACTCGCGTCTGAGCACTCGATTTATATTGGGCAGTCCGAGATCGTCTAATAACGCGCAGAGGGAATCCAGCAACGTTGAATCTACTGGCGAAACTTCAGAAAGGCCAGCGAGAGCAAGGAAATCCTTCCCCAATCCTCCACTTCAATCACCAATGAAGAAGACATCAGGAAATTTCCAATGTCAGGTATGCAATGACAAATTCAACGACGTTACAGAGCTGAGGACCCACTTGTGGGACGTCCACTGTGCCCGCAACAAACCAGAGAAAAATTTCTCCAATGACGAGCTCCAATGCGAACTATGCACGAATATTTTCCCCGATCAGGAAACCCTGGCAGCTCATATGCGATGGCATAAGGCCAACCCGATTCTCAGTGACATACGAAAGACGTTCACCTGCGACGTATGCGGCAAGTGTTATAGTTCGAAGAAGGTTCTATATAAGCACAAGAGACTTCACAAAGCTACCGTTGTAGCATCGATCAAATTCCAATCTTTAGCCAGAAAACCGATGGCTTCACAATTCTTGTGCAACTTCTGTCGCAAAATCTTTTCTAGCAGCCAGTCTTTGCAACGGCACAAACTCAGCTTCCACAGTGAGCCGCTAAACCAACAACGttcgcagcagcagcagcagctaTACAACAGCAATCGAGCATTGTCATTCGAGGATGAACCGAGAACAAAACGTATGAAATACGAGCTCGAAAATGATTCACAGGCCAAACTGTCTCCCTTCGCCATGGACTTTGCTGGTGAGAGAAGGAAGCCGGTTATGTGTCACGTTTGCAAGAAAATGTTCGCTAACATGAGTGTTTTGTACAAGCACAAACAAATTGTCCACAAGGCCCGAAAAGATTCAACACTTGAATGCATACCGATGTCCACTGGAAACGGTAAGTTTTCGTGTAATATCTGTTTCAAAGAATTTCCTGGTCTGTCGAATCTGCGACAGCATTTCACGATCAAGCATAAGAAGGCGAGAGCACAGTCCGAAGCCAGCGGCGCATCGAGCAATGACAGATTGTCGCTTCCGACACCCGAACGACCAAAGGAAGTTCCTTCCTACGAAGTGGCCTACAATAACATAATGTACAGTTGTAAGCTGTGCAAGCAGTGCCACGTCTTCAATAAAGGATCCATCATGAGCCATATCACCAATGTTCACAACACGGTGTACGAGGCCGATAGCAAGATGTTCCATAGGGAAGTTAATCTGAGCACTTACGTAGTGAATGATGCATTCGGAGCTACTTGTCCGCAATGTGACGTTAAATATCCTAACAACAGGGCTCTTaagatacattatataaaattccacGATAATGCCGATTAA
Protein Sequence: MMDEDVVEIENVENVCRLCLATDGPRSSVFATEKEDDEREDSSGVPLADKIQACLSIQISATDKLSTLICANCVKNVNQWHTYKESCLRSQDKLQEWLANQLHLNPTVVTIKDEPMDIDYEDNVEIISEITNNLEQQSQPIQTVEHNEPNDEKEQDKTDNNDAKDNNEEPIPEPIPSGIVETEKETDKEENQTEENRTEETHQEDVPLRSIKCEPQDDDDTDCTIELESTNSSELLMNSMSVDETDTVMEADSTQKSNSVGAPAKKKFRRGPHTHFRGTRVFKQKCMHCQIFLHSKYSYMKHMNRFHSKENGVENLESQNDEEEMIEDLEDELVSMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLSHIRQHLPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKIGNERYFTCNMCLRSMPGRKELLSHLSKHSDKQYEEMMGPARAPPKLKPMAPLSSPTKNSNKITGGLPYKNGDPTHNHACDLCGMIYRYRPNMLKHKEMCKQLDPESRTLYKCVHCYMTFIVFKKFHYHVTADHKKKDFTCATCHSKFRSPSDFLAHHETHREAQSNQQVQHDSSNSQNAVQTPLKERNAYETNTKSKMSPRISSEKFNCPLCPKKFSTKVELNEHRTLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIDDPNERNANVSCVEYGSLNEDVAIDKDSMNTSTVSDPGSQSHKCSECGKVMSSYANLRRHFKIAHRNSKVYDCAECSRMFMRKDLYENHMQLKHNGKKTMIQCPECPKSFVFQTNFSYHFRTAHLEKSQNGYACDICGKVFNEEASLKIHRGWHNRANSRLSTRFILGSPRSSNNAQRESSNVESTGETSERPARARKSFPNPPLQSPMKKTSGNFQCQVCNDKFNDVTELRTHLWDVHCARNKPEKNFSNDELQCELCTNIFPDQETLAAHMRWHKANPILSDIRKTFTCDVCGKCYSSKKVLYKHKRLHKATVVASIKFQSLARKPMASQFLCNFCRKIFSSSQSLQRHKLSFHSEPLNQQRSQQQQQLYNSNRALSFEDEPRTKRMKYELENDSQAKLSPFAMDFAGERRKPVMCHVCKKMFANMSVLYKHKQIVHKARKDSTLECIPMSTGNGKFSCNICFKEFPGLSNLRQHFTIKHKKARAQSEASGASSNDRLSLPTPERPKEVPSYEVAYNNIMYSCKLCKQCHVFNKGSIMSHITNVHNTVYEADSKMFHREVNLSTYVVNDAFGATCPQCDVKYPNNRALKIHYIKFHDNAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -