Basic Information

Insect: Monomorium pharaonis
Gene Symbol: -
Assembly: GCA_013373865.1
Location: JABXFI010000091.1:14458-23535[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.1 17 6.9 0.3 1 23 365 388 365 388 0.91

2 10 0.0037 0.6 11.4 3.3 1 23 395 417 395 417 0.97

3 10 0.00043 0.07 14.4 5.3 1 20 423 442 423 445 0.95

4 10 0.0002 0.033 15.4 5.6 1 23 451 473 451 473 0.97

5 10 5.8e-06 0.00094 20.3 3.3 1 23 479 501 479 501 0.98

6 10 9e-08 1.5e-05 26.0 0.9 1 23 512 534 512 534 0.98

7 10 1.5e-06 0.00025 22.1 1.3 1 23 540 562 540 562 0.98

8 10 8.5e-07 0.00014 22.9 0.5 1 23 568 590 568 590 0.97

9 10 1e-06 0.00016 22.7 0.6 1 23 596 618 596 618 0.96

10 10 7.3e-07 0.00012 23.1 0.3 1 23 624 646 624 646 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.1	17	6.9	0.3	1	23	365	388	365	388	0.91
2	10	0.0037	0.6	11.4	3.3	1	23	395	417	395	417	0.97
3	10	0.00043	0.07	14.4	5.3	1	20	423	442	423	445	0.95
4	10	0.0002	0.033	15.4	5.6	1	23	451	473	451	473	0.97
5	10	5.8e-06	0.00094	20.3	3.3	1	23	479	501	479	501	0.98
6	10	9e-08	1.5e-05	26.0	0.9	1	23	512	534	512	534	0.98
7	10	1.5e-06	0.00025	22.1	1.3	1	23	540	562	540	562	0.98
8	10	8.5e-07	0.00014	22.9	0.5	1	23	568	590	568	590	0.97
9	10	1e-06	0.00016	22.7	0.6	1	23	596	618	596	618	0.96
10	10	7.3e-07	0.00012	23.1	0.3	1	23	624	646	624	646	0.98

Sequence Information

Coding Sequence: ATGTCGTGGCAAAGTCCGAGCTCGGGGATTGATTCCTTTACGAATAAGTGTCGCGCGTGCATGAAGGAAGGTGGCAAGATGTTGCCTATGTATGATGATAATATCATCAGCAAGATTAATCTGCCATACAAGCTTGCGCAGCTCACGTCCATCCAgATTGATAGATTTGATGGACTACCCAACATGCTTTGTCCGAAATGTGCTTATCGaactaatattttgtataacttcAGATTGGAGGTACAAGAGTCAGACAAGAAACTCAGAATGATACGTGAAAGTCAAATGTGCAAGaaaaaagaattaattgaaGAAGATAGTGGTATGCTAATAGATGAATCCttagaattaaatatgttaagtgacaaaaaatctatatacagTGAAGATACTTTTGACAGTGTCAACattaaaacagataaaaaggTTAAGCAAGAACAACAATATGAAATGGATGTATCTGAGATAATTGAAAATGACAGGGATGATGACAAAAAGAGTTCACAGTTAAATgagcttttttataatattatacaagaaACCAACGAGGACCAAATGGATGTTCATTTGGTAAAAACTAGTATACCTGaagaaatttcgaaaatgtTTCCATCAGAAGATGTtacaataatgtatatatcGAAATCTGCGATTGAATCGATGCCAGAGAATACCTTAACACTCGAGCAGGAACAAGAAGAAATCGAAAAtggcaataatatatttatcactgAAGAAGTGGAAAACCTAAATGaacaagaaaattatgaaGAGGCTTCAAGTAATATGTACATTTCTAGTCCTGTGGAACCTAATGCAACCGAAAGGAATAAATGCGCTTATTGGGAAAATCAAGATACatcaataatgataaatgttGATGAACAAAAACAATATGATGACACgatacaaaatgaaaataaagaaacgaaGCTTAATGAGAGTAGTTCGAACACTGAACAATCCATAAGAGCAGAGAATAGTGATGGATCTGATTCTGACTACTTTGTCGATGGTAAAGACAATATATTAGGCAGTGTGAGTGATGCGGTTATACGAATAAAAGAAGTTCAGCAAGAAAATGGGATTGAATATCAATGCACGTTGTGTCTACAGAATTTTGATCAACTGACAAATGTATTGTTACATACTATCGATAATCACGTCCCTGTCAGCGGACCGTTCTTTTGTATGGTGTGTGAAAAGGATTGCAAGAGCCTTCGGGAACTGCGAACACATGTAAAAACACATAATGGCGAGTTCCCGTATTCCTGCTTCCTTTGTAAAAAGGCGTACACCAGAAAGAGATATCTGAAAAGACACATGGCATGCCATCCCAACTTTTCACGGCATCGCTGTCTGAAGTGCGGTTGTcgttttaaatcaaaatcagAATTAGAGACTCATGCGACGACGCATGAATGCATTGCACCCTATGTCTGCAATCAGTGTACACGTGTATTTAATCATAAAGGCAATTATAAACGACATTTAATCAGCCATTTAGATCCTCAGGGTCTTCATTTACCTAAGTATCCATGCAGTTACTGTGACAAACGCTTTCCTAATAATCGTACATTACAAACGCATATACGTGTACACACTGGTGAGAAGCCGTTCCAATGTGACATTTGTTTCAAGTCATTTTCACAACGAGGCAACTTGTTGAACCACTCAAAGATACATTCAAATCCTCGCAGCTATACGTGCGAAGTCTGTGGTAAAAGCTTCAATCAACGTGCCACATTACGAGATCATACATTATTGCATACAGGTGAAAAACCCCACGTATGTACTGTATGTGGAAAAGCATTTACGGTTAGCGCGGCATTGAGGAGGCATATGTTTAATCACACTGAATGCAAGCcatttaattgtgaaaattgtGGCATGGGATTTGTTGGCAAATATGATTTACGACGACATATGCGAGTGCATGAGAATCGACCAAAAGAAAAGCGAagaaaaaacgcaaaaaaacGCAAAAGCTAA
Protein Sequence: MSWQSPSSGIDSFTNKCRACMKEGGKMLPMYDDNIISKINLPYKLAQLTSIQIDRFDGLPNMLCPKCAYRTNILYNFRLEVQESDKKLRMIRESQMCKKKELIEEDSGMLIDESLELNMLSDKKSIYSEDTFDSVNIKTDKKVKQEQQYEMDVSEIIENDRDDDKKSSQLNELFYNIIQETNEDQMDVHLVKTSIPEEISKMFPSEDVTIMYISKSAIESMPENTLTLEQEQEEIENGNNIFITEEVENLNEQENYEEASSNMYISSPVEPNATERNKCAYWENQDTSIMINVDEQKQYDDTIQNENKETKLNESSSNTEQSIRAENSDGSDSDYFVDGKDNILGSVSDAVIRIKEVQQENGIEYQCTLCLQNFDQLTNVLLHTIDNHVPVSGPFFCMVCEKDCKSLRELRTHVKTHNGEFPYSCFLCKKAYTRKRYLKRHMACHPNFSRHRCLKCGCRFKSKSELETHATTHECIAPYVCNQCTRVFNHKGNYKRHLISHLDPQGLHLPKYPCSYCDKRFPNNRTLQTHIRVHTGEKPFQCDICFKSFSQRGNLLNHSKIHSNPRSYTCEVCGKSFNQRATLRDHTLLHTGEKPHVCTVCGKAFTVSAALRRHMFNHTECKPFNCENCGMGFVGKYDLRRHMRVHENRPKEKRRKNAKKRKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016072;
90% Identity: -
80% Identity: -