Mpha014647.1
Basic Information
- Insect
- Monomorium pharaonis
- Gene Symbol
- -
- Assembly
- GCA_013373865.1
- Location
- CM023795.1:18433314-18443028[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.4e-06 0.00088 20.4 1.2 2 23 312 333 311 333 0.98 2 11 3.9e-05 0.0064 17.7 1.4 1 23 341 364 341 364 0.96 3 11 0.00078 0.13 13.6 2.7 1 23 407 429 407 429 0.98 4 11 5.1e-07 8.3e-05 23.6 1.5 2 23 486 507 485 507 0.97 5 11 6.5e-05 0.011 17.0 1.1 1 23 512 535 512 535 0.95 6 11 3e-05 0.0048 18.0 0.2 1 23 572 594 572 594 0.98 7 11 8.8e-07 0.00014 22.8 1.7 1 23 604 626 604 626 0.96 8 11 2e-06 0.00032 21.7 1.2 1 23 632 654 632 654 0.99 9 11 1e-05 0.0016 19.5 0.2 1 23 660 682 660 682 0.98 10 11 4.1e-05 0.0067 17.6 4.5 1 23 688 710 688 710 0.98 11 11 0.0012 0.19 13.0 0.5 1 21 716 736 716 737 0.94
Sequence Information
- Coding Sequence
- ATGGCGGTCCCGAACGATGACGCGATGGTGAATAGCACAGCATACGTGGAGCGGCTCGTGGGTGACGAGTGCCGCATCTGCCTCAAGTCCTGCACGGAGGCGTGCCAGCTCTTCCGCGATGACGGCGGGATACCAGAGAAGCTGATGGCCATCGCCGCCGTGCAGGTAGAGGAGGGAGATGGACTACCAACTGCCATTTGTTTATCCTGCAATCATCTGCTTGATGTGTCCTACGACTTCAGATGTCAAATTCAGAATGCCGACGTGAGACTACGTCAGATTCTGAAGTTGCAGGTTCAATCTGTGCCGATCGACAAACACTCAAAGGATGCCATGATGATCAAGGATATTGCGGATGTTGTATCTAATGTGGTGTCCTGTAAAAAGGATAATCATGTCATAGAGCAGGACATTTACTCATCTCACAATATTGTTACTTTTGACACGACTGCTGTTCAGCCTCATGTGACGATTAATAATGAATCTCATATAAATCATCACAAGTTTATGCAAAAGGCAGAGGAAAATATGGAACTAATTGGAAAGAATATATCGTATAGTACCCTTGAAGAGAATGTacataatgttgaaataatggAAGCATTGTGTCGCGAAACGCACCTGGAGGATGCAGCCGAGCATTCAGTTGTTCCTTCATTATCCAGTTCATTGACGGAAGATGGATGCAAACAGGAGCAGTTAATGTTGCCTGAGGACAACGAGACATCGGGAAGTGTaacagaaaatgaaaatagGGATGATACAAAAGTCGAAATTAAGAATGACATAATTTTAGAGCATTTCTCTGACCATGATGTTTTGAAGGAGAATTTTACAGAGTTGGGCGCAGAAGACAATCGAGATACTAAAAGTGAAATTGGAAATTGCAGCGACGATGAGGAGAAGCCGCTCATAAACAGGACGACTAGACAAAAGTGTCCGCACTGCATCAAATCGTTCGCGACGAAAGTGGCGTTGCAGCGACACATGAACGTCCACAAGCACAAGATGAAGCTGCGCTACGTGTGCGTTGTGTGCGACAAGCAGTTCTCGAATATTGACAAATTGAAGAGCCACATGTTATTGTGTCACGAGGCACAGGTGGCAGATAATAAAGCATCACAGGATGACGAGAAGCAGGCGAATAAAATGTCGGCGAAGGTCACGAGAAGCGGCAACGTGGTGGACGGGATGAGAGAGGAGAAGAAAAACTTCAAGTTTACGTGCAAGGTCTGCTCGAagcaatttatatatcaaaagtcatttttatCTCACGCTAAAAGTCACGCCGAATATAATAATGTCGATATGTCGGACGACGTGCTCGATCAGTCGGTGAGTAAGACAACAAGCGAACAAAAGGACAAAATGCCGACGACGATCAAGGAAAACGAAtccgaggaggaggaggaagaggaggatgATGATGATAGCGATTTGCCGATTGAAAGTCTGCAATGTACACAATGTGGTAAACTTTTTGCTACAAAAAGAAATCTGAAGAGGCACATCTCGACGCACAGCGGcttgaaatttaattgttcaaCATGCGGTAAAGGATTTTCAAGGATCGATAAGTTAAAGGATCACGAACAGTCAAAACACAAAGAGGAAATATTTGGTAATACTGACGACGAGGTTGATGACGAGGAAGATGAGAGTAAAATCAACGAGAATTCTGAGAATCGAAAGAAGGACCGACATAATAGGCCACACAAATGTGCACTCTGTCCAAAAGCATTCGTACAGGCTCAATCTTTGGCAAACCACATAGAAAGGCATAAACGAGTGAAAGATCCGCAGAAACGGTTTCTTTGCGAGAAATGTAGCAAATGTTTCGCTCAGAGTGGCTCGCTGGTGGCACATATGCGTACGCACACTGGCATCAAGCCGTACGTATGTAACGTGTGCAGTCGTGCCTTCACCAAGAGCACGTATCTGCAACTGCATTTGAGAACTCACAGCGGTGAGAAGCCGTATATCTGTCAATACTGCAGCAGGGCGTTTGCTCGGGCCAACACTCTGGCACGTCACATCACTATGCATACTGGTGAGGCCAAGTATCATTGCAATATCTGTACCAAGTCTTTCCGGCGGCTGACCTCGCTGAAcgaacacacatacacacatactgGTCAACGACCATATGCGTGTAAACTCTGCACGAAGAGGTACAACAATGCCGGATCGTTGTATGCACACACGAAGAAGTGTAAGGCGCAACAGTTGTCCAGCTCGACGACCGCGTTTGCGGTGTCCACGGCGGACAACGTACCCCAGCAAAACGACACGTCCATGCCGCAGTTGCTGATCTATTCCCAGAGGAAGCTGGACGAGGCAACTGTTGGTCAAGTAGTATCCACTCCGCAATACATGGTAACAAATGTGCACAATCAAAAAACAATGCCTACCAACGTAATCCAACCGTTTACCGTAGAGGATCCGaatgtatataattcaaaacaatttaagaaCTCGTATTATGCTATTTATCCAAACATGTAA
- Protein Sequence
- MAVPNDDAMVNSTAYVERLVGDECRICLKSCTEACQLFRDDGGIPEKLMAIAAVQVEEGDGLPTAICLSCNHLLDVSYDFRCQIQNADVRLRQILKLQVQSVPIDKHSKDAMMIKDIADVVSNVVSCKKDNHVIEQDIYSSHNIVTFDTTAVQPHVTINNESHINHHKFMQKAEENMELIGKNISYSTLEENVHNVEIMEALCRETHLEDAAEHSVVPSLSSSLTEDGCKQEQLMLPEDNETSGSVTENENRDDTKVEIKNDIILEHFSDHDVLKENFTELGAEDNRDTKSEIGNCSDDEEKPLINRTTRQKCPHCIKSFATKVALQRHMNVHKHKMKLRYVCVVCDKQFSNIDKLKSHMLLCHEAQVADNKASQDDEKQANKMSAKVTRSGNVVDGMREEKKNFKFTCKVCSKQFIYQKSFLSHAKSHAEYNNVDMSDDVLDQSVSKTTSEQKDKMPTTIKENESEEEEEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRIDKLKDHEQSKHKEEIFGNTDDEVDDEEDESKINENSENRKKDRHNRPHKCALCPKAFVQAQSLANHIERHKRVKDPQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNICTKSFRRLTSLNEHTYTHTGQRPYACKLCTKRYNNAGSLYAHTKKCKAQQLSSSTTAFAVSTADNVPQQNDTSMPQLLIYSQRKLDEATVGQVVSTPQYMVTNVHNQKTMPTNVIQPFTVEDPNVYNSKQFKNSYYAIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476429;
- 90% Identity
- -
- 80% Identity
- -