Basic Information

Insect: Monomorium pharaonis
Gene Symbol: -
Assembly: GCA_013373865.1
Location: CM023797.1:5975730-5979741[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00025 0.04 15.1 0.6 1 20 58 77 58 79 0.94

2 13 4.7e-06 0.00075 20.6 1.1 1 23 161 184 161 184 0.94

3 13 5.5e-05 0.0089 17.2 3.9 2 23 191 213 190 213 0.95

4 13 0.00065 0.11 13.8 3.8 1 21 219 239 219 244 0.94

5 13 8.5e-08 1.4e-05 26.0 2.8 1 23 251 273 251 273 0.99

6 13 4.6e-05 0.0074 17.5 1.3 2 23 283 304 282 304 0.98

7 13 0.00027 0.043 15.0 0.2 2 23 311 332 310 332 0.97

8 13 2.4e-06 0.00039 21.5 2.3 1 23 338 360 338 360 0.99

9 13 4.7e-06 0.00076 20.6 1.8 1 23 366 388 366 388 0.94

10 13 2e-05 0.0032 18.6 0.9 1 23 394 417 394 417 0.94

11 13 4.2e-06 0.00068 20.7 0.5 1 23 423 445 423 445 0.97

12 13 1.4e-07 2.3e-05 25.4 0.5 1 23 451 473 451 473 0.99

13 13 1.7e-05 0.0027 18.8 1.4 2 23 480 502 479 502 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00025	0.04	15.1	0.6	1	20	58	77	58	79	0.94
2	13	4.7e-06	0.00075	20.6	1.1	1	23	161	184	161	184	0.94
3	13	5.5e-05	0.0089	17.2	3.9	2	23	191	213	190	213	0.95
4	13	0.00065	0.11	13.8	3.8	1	21	219	239	219	244	0.94
5	13	8.5e-08	1.4e-05	26.0	2.8	1	23	251	273	251	273	0.99
6	13	4.6e-05	0.0074	17.5	1.3	2	23	283	304	282	304	0.98
7	13	0.00027	0.043	15.0	0.2	2	23	311	332	310	332	0.97
8	13	2.4e-06	0.00039	21.5	2.3	1	23	338	360	338	360	0.99
9	13	4.7e-06	0.00076	20.6	1.8	1	23	366	388	366	388	0.94
10	13	2e-05	0.0032	18.6	0.9	1	23	394	417	394	417	0.94
11	13	4.2e-06	0.00068	20.7	0.5	1	23	423	445	423	445	0.97
12	13	1.4e-07	2.3e-05	25.4	0.5	1	23	451	473	451	473	0.99
13	13	1.7e-05	0.0027	18.8	1.4	2	23	480	502	479	502	0.95

Sequence Information

Coding Sequence: ATGGAAGAGGTGATAGAGATCGTGAAGGTGGAGGAGTGTGATACACTTATTGAGAACGGAGCTACAGAAGTTTTGTTTgATGGGGCTATCTCACAAGAGGGTATAGTTGTGGCCAGTAGACCAGCTACTGACAATGAGAGAgACGATCTGGTTATTTCGATTATAACTGATTATCAATGTGTAACATGTCATCGTATATTCCAATCAAAGGATaTGTTGCAGAAGCATGTAGAGATGTGCAGAGAGGAAGATGACTCAAATAATATCATAGGGCTTGATGATATGACAAATTACGAttcagaagaagaagaagacgaagaagaagaagatgaTCCTGAATCTTTAAATGTAGATCTCTCTGAAGATTCGGATTCCAAAAgtcaaaagaataataatgaaaaacctGTCATTAAGCCTGTACCTGAAACGCAGTGTCATTGCTGCGCGGAAGATATAAAGACGGCACACAGTGGTGGAGAGTACAAGTGTTCACATTGCGACCtcagttttaagaaaaaggcATCTTTGGCAAGACACGTTGTAGTCATACATTGGAAGTGCGAATCATGTACATGCAACGAATGCGGTTCTTCTTTCCGCGATAAGAAAGCTTTGAATAAGCATCGCTATACAACACATGAagatcgtaaaatttttaaATGTGAACCTTGCGACACTTATTTCTCCCGGAGCTATCATTTAAATCGGCACATAATGCAATCTGGGTGTCACGGTAACATACTTAATACATTCAGATGTCAAGTTTGCAAGAAAGATTTTACGCGTAAGGACAATTTACGGGAACACTTGCGTACTCACGCGGGAACGCCCCAGAGACAAAAAAAGAAGTGCCAATATTGCCCGAAGGAATTTTTTACGAATCAACAATTGTTGGTACACGAACGCATGCATACGGGAGAGCGACCAGTCCAATGCGATTTATGCCCAAAGACATTTCTATCGCCGCTCGCGCTGAAAAAACATCGTCGTGTACACACCGGAGAGAAGCCGTTcgaatgtaaatattgtcaGAGAAAATTTGCCGCTCGCGAGACATTAAATCGTCATCAACGAACGCACACTGGCGAGAAACCACACGTATGCCAGTATTGTGGCAAATCGTTCATACAGGCAGCGCAATTAAGGGCACATGTATTCCATCACACCGGGGAGAATGGCTTCTATTGCGATGTATGCGGCAAGGCGTTTAATCGGAAGGCGCGTTtaaatattcacaaaaaattcGTACACGAGGGGGCAATCCCATTCACATGTGACGTCTGCGAGAAGGGTTTTACACGAAGGGAGGACTTGGTGAAACACAGATTGTTACACACTGGCATCAAACCGTTTAAATGCGACAAGTGCCCGAAAGCCTTCTCGGCGAAATCATCGTTGCAGGCTCACCTTAACACTCATAGACGCGAACCGCCACAATCATGCGTCGAATGCAATAGAGTCTTTATCCGGCAAGACTGCCTGATGCGGCACATTCGGGCGAGGCATCGGGAATTGTTGGAGGACGTGATGAACGAGGTCGAGAAAAAGCATTTGCAAACGCAGTTGTACAACATCGCATCGGCTGCTGCCGCCAAGACGAAAGCAGGCAAATCCAGAACACTCTCCTCCGATGAGTTGCTGAATGCCATCAGAGATCTCTTGAGGATACTTATTGACGAGGAAACGTTGCAGCTGTTTGGTTGGCCGGAAACTCCAACACAAGACATCCTCGAAGCCGTGATCAGAAGATGCGGACACGAGCCGATAACAGCGGAAAGCAACGTGATACTTACCGAGAGGCTACGACAAAACGTAAAACTTCTATTCACCGTTGTCATCGACACGGTGAACGATCATGAAGTCAAGTCTCTCTTGACGACGAAAACAGTGGACGACGTCATTCTTCatgttttagaaatatctAATTCAGATTAG
Protein Sequence: MEEVIEIVKVEECDTLIENGATEVLFDGAISQEGIVVASRPATDNERDDLVISIITDYQCVTCHRIFQSKDMLQKHVEMCREEDDSNNIIGLDDMTNYDSEEEEDEEEEDDPESLNVDLSEDSDSKSQKNNNEKPVIKPVPETQCHCCAEDIKTAHSGGEYKCSHCDLSFKKKASLARHVVVIHWKCESCTCNECGSSFRDKKALNKHRYTTHEDRKIFKCEPCDTYFSRSYHLNRHIMQSGCHGNILNTFRCQVCKKDFTRKDNLREHLRTHAGTPQRQKKKCQYCPKEFFTNQQLLVHERMHTGERPVQCDLCPKTFLSPLALKKHRRVHTGEKPFECKYCQRKFAARETLNRHQRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDVCGKAFNRKARLNIHKKFVHEGAIPFTCDVCEKGFTRREDLVKHRLLHTGIKPFKCDKCPKAFSAKSSLQAHLNTHRREPPQSCVECNRVFIRQDCLMRHIRARHRELLEDVMNEVEKKHLQTQLYNIASAAAAKTKAGKSRTLSSDELLNAIRDLLRILIDEETLQLFGWPETPTQDILEAVIRRCGHEPITAESNVILTERLRQNVKLLFTVVIDTVNDHEVKSLLTTKTVDDVILHVLEISNSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423083;
90% Identity: iTF_01354772;
80% Identity: -