Basic Information

Insect: Monomorium pharaonis
Gene Symbol: -
Assembly: GCA_013373865.1
Location: CM023794.1:29961632-29979152[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.6e-05 0.0059 17.8 1.4 1 23 335 357 335 357 0.96

2 17 1.3e-05 0.0021 19.2 1.9 1 20 363 382 363 385 0.94

3 17 9.1e-06 0.0015 19.7 1.4 1 23 391 413 391 413 0.98

4 17 5.3e-05 0.0085 17.3 4.4 1 21 419 439 419 441 0.95

5 17 7.1e-06 0.0012 20.0 5.6 1 23 447 469 447 469 0.99

6 17 1.6e-05 0.0026 18.9 5.3 1 23 475 497 475 497 0.97

7 17 6.1e-05 0.01 17.0 6.9 1 23 503 525 503 525 0.96

8 17 6e-08 9.8e-06 26.5 2.7 1 23 531 553 531 553 0.98

9 17 4.5e-05 0.0072 17.5 6.7 1 23 559 581 559 581 0.97

10 17 2.9e-07 4.6e-05 24.4 2.8 1 23 587 609 587 609 0.98

11 17 5.5e-06 0.00088 20.4 7.8 1 23 615 637 615 637 0.98

12 17 1.7e-05 0.0028 18.8 9.1 1 23 643 665 643 665 0.98

13 17 2.3e-05 0.0037 18.4 7.5 1 23 671 693 671 693 0.98

14 17 0.0011 0.18 13.1 8.8 1 21 699 719 699 721 0.94

15 17 8.3e-06 0.0013 19.8 0.4 1 23 727 749 727 749 0.98

16 17 0.02 3.2 9.2 4.5 1 23 759 781 759 781 0.98

17 17 3.2e-07 5.2e-05 24.2 1.3 1 23 787 809 787 809 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.6e-05	0.0059	17.8	1.4	1	23	335	357	335	357	0.96
2	17	1.3e-05	0.0021	19.2	1.9	1	20	363	382	363	385	0.94
3	17	9.1e-06	0.0015	19.7	1.4	1	23	391	413	391	413	0.98
4	17	5.3e-05	0.0085	17.3	4.4	1	21	419	439	419	441	0.95
5	17	7.1e-06	0.0012	20.0	5.6	1	23	447	469	447	469	0.99
6	17	1.6e-05	0.0026	18.9	5.3	1	23	475	497	475	497	0.97
7	17	6.1e-05	0.01	17.0	6.9	1	23	503	525	503	525	0.96
8	17	6e-08	9.8e-06	26.5	2.7	1	23	531	553	531	553	0.98
9	17	4.5e-05	0.0072	17.5	6.7	1	23	559	581	559	581	0.97
10	17	2.9e-07	4.6e-05	24.4	2.8	1	23	587	609	587	609	0.98
11	17	5.5e-06	0.00088	20.4	7.8	1	23	615	637	615	637	0.98
12	17	1.7e-05	0.0028	18.8	9.1	1	23	643	665	643	665	0.98
13	17	2.3e-05	0.0037	18.4	7.5	1	23	671	693	671	693	0.98
14	17	0.0011	0.18	13.1	8.8	1	21	699	719	699	721	0.94
15	17	8.3e-06	0.0013	19.8	0.4	1	23	727	749	727	749	0.98
16	17	0.02	3.2	9.2	4.5	1	23	759	781	759	781	0.98
17	17	3.2e-07	5.2e-05	24.2	1.3	1	23	787	809	787	809	0.97

Sequence Information

Coding Sequence: ATGGCGTTGACTTCCAGCTCGCATCATCAGCAACAGTCAACAGCCGcgcatcatcatcatcagcCTTCAgttagcagcagcagcagccacCACAGTTCTCTGCAGTCGAATCCACAGATTCCTGTGTCTCTTCCTGGCCTTACTTTAGACGGCGCACATATACCAGCGAGTCACTTGGCTGCACATGCACAAATGCAACAGATGCAGGCGCAGGCACAACAGCTgcaccagcagcagcagcagcaaacgccgcagcaacagcagcagcagtccCATCATCAGATGCCGAATCATCAGAACGCTCAGAACAATGGACCAACGGCGCACAGCCAGAGCGCGCAGCGAGACGATAACAAGGTCAAGGACGAGGGCGGTAGTTGCACCACCGAGCGTTGCAGCGACAATCAGGTTCACTGTCAAGTTCAATGTGATCTGCAATTACAACCACCCCAAGATCTTCAACAGAGCTTGatgcaacagcagcagcagcagcagcaacagcagcagcaacagcagcagatTGGGGTCAACATTAGCGGTAACTCCACCACTGAGGGAGGAAGCCAGAGTAATTCCGAGAAAcccgagaaagagaaggagttGCGGCAACTGAATATGACCCAATTCCAAGTCCCTGACTTGAAACCAGGAGGACACATGATGGACGTGAGGACAGCAGACGGATCGGTCGTCAAAATCAGCGCGGGAAACGAGCAAGATTTGGCCAAGACCCTTGGGGTCGAAATGgtacaaaatatgtacaagGTTAATGTTGAAGATATTAACCAACTCTTGGCGTATCACGAGGTCTTTGGAAAGCTGCAGAGTGAAATTGCAGCTGGAACGACTTTAGTAGGCAGCACTGTGCCTACACAAACAGTTACCACGATACAGAACGGCACGCCAATCGTGCAACAGGTTCAACTGAACAAATTTGACATAAAGTCGAGCGACGGCGAGGCAACGCCTGGTCCGAGTGCATCGCCCGTATCGGTCGGCAGTCACGCTTGCGAGATATGTGGAAAGATCTTCCAGTTTCGTTATCAGCTCATTGTACATCGCAGATATCATACCGAGAGGAAGCCATTTACATGTCAGGTATGCGGTAAAGCGTTCTCGAATGCGAACGATCTTACACGTCACGGCAAGTGTCATCTGGGTGGATCCATGTTTACCTGCACCGTTTGCTTTCACGTCTTTGCGAATGCGCCTTCGCTAGAACGTCACATGAAGAGACATGCCACCGACAAACCGTACAATTGCACGGTCTGTGGTAAGAGTTTCGCGCGCAAAGAGCATTTGGATAACCACACGAGATGTCATACTGGCGAGACACCGTATAGATGTCAATACTGTTCGAAGACGTTTACCCGAAAAGAACACATGGTAAATCACGTTCGCAAACACACTGGTGAGACTCCCCATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACACTTTATGAACCATGTTATGTGGCATACAGGAGAAACCCCTCATCATTGTCAAGCTTGCGGCAAGAAGTATACACGCAAAGAGCATCTCGCTAACCATATGCGCTCGCACACAAACGATACACCGTTCCGTTGTGAAATATGCGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGCGAGACGCCGCACCGCTGTGACTTCTGCTCGAAGACGTTCACGCGAAAGGAACACCTCCTGAACCACGTTCGCCAGCACACGGgGGAGACGCCCTTCCGCTGTTCATACTGTCCGAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGTCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTTTGCCAGAGGACGTTCACTAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCTTCACACTGTTGCAACGTGTGCTCCAAACCATTCACAAGAAAGGAACATCTCGTGAATCATATGCGTTGCCATACCGGTGAACGTCCATTTGTGTGCACAGAATGTGGCAAGAGTTTCCCGCTGAAGGGCAATCTCCTGTTCCACATGCGGTCGCACAACAAGGGCAGCAACGCTGAGAGGCCGTTTCGCTGTGACCTGTGCCCCAAAGATTTCATGTGCAAAGGACATTTAGTCTCGCACCGGCGCTCGCATTCAGACGAGCGGCCGCACAGTTGCCCGGATTGCGGCAAGACCTTCGTCGAGAAGGGCAATATGCTACGACACTTGCGCAAGCACGCGGCTGAAGGCCCACCGACACAAGTCAGCACACCGTCGGCTATACCGCAATCCGGTGTCCTGCCGATACCGGCAGCGGCAGCAGTTCTGGTTGGACATCCATTAGCACCGCCGGCGCCGCCTGTGGTGCCGCAACACACGGTGGTCGTACCGACACCGCCCGGTGTATTGACATCATACtaa
Protein Sequence: MALTSSSHHQQQSTAAHHHHQPSVSSSSSHHSSLQSNPQIPVSLPGLTLDGAHIPASHLAAHAQMQQMQAQAQQLHQQQQQQTPQQQQQQSHHQMPNHQNAQNNGPTAHSQSAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQQQQIGVNISGNSTTEGGSQSNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00014883;
80% Identity: -