Mpha018501.1
Basic Information
- Insect
- Monomorium pharaonis
- Gene Symbol
- -
- Assembly
- GCA_013373865.1
- Location
- JABXFI010000286.1:15717-19234[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-10 4.7e-07 30.2 0.0 2 35 58 90 57 96 0.91 2 2 4.6 5.3e+03 -2.0 0.0 31 43 436 448 433 450 0.82
Sequence Information
- Coding Sequence
- ATGCATTCAGAAAAGATCAGAAAAAAGGATCAACAGGAAAAACAAACATGCAAGAGTCTAAAAagatcaaaagaaaaaaaagcaaacaaaataaaacaaaagtccATGGTTTTTGTGAATAATCCAcaaaaagtttctaaaaagaaaaaaactaaaagGCTTAACTATACGTCTGATGACATGGATCATGCTTTGAAAGCTATCGATTCAGGAGTTTCTTTAAGAAAAGCTGCAGCTGCATTTGGAGTTCCTGCAGCCACACTTGGtaggaagaaaaataatccTGATgccattaaaagaaaaacaggaCCAGAAACTGTCTTATCAAAAAACGAAGAAGATGATATAGTAAATTGGGTACTGTATAGAGCTGAACGAGGGATGCCTGTTACAAAAACAGAATTGTTGGACTCGGTGCAGAAGTTTGTGACAttgctgcaaaaaaaaactccGTTCAAAGAAAACCGTCCAAGCAGACATTGGTATGAAGGGTTCAGAAAACGTCACCCGCAATTGACAATGAGAAAACCTCAGCATTTAAGTTTAAATCGAGCAACCGTAAGCAAAGAAGATTTGCAAGAGTGGTTCAGCgatcaaaaaaaatatttaaaagaaaaaaatttactagaaaTTTCTTCTACTAGAGTTTTCAATTGTGAtgaaactaatattattttatgtccaGATTCAGAGAAAGTCTTAATAGAAGTAGGATCTCGCTCAGTGTACACCATAACTGACGCTGGAAAAGAAAGTCTCACAGTTTTGTTTATGTATGCTGCAAATGGTGTTCGTGCTCCCCCTATGTTAATGTACGCTTATAAAGGAGATGTACCAAAGAAAATTGTCGAAAATACTCCAAAAAGTTGGGGTATTGGTATATCTGAAAATGGTTGGATGACCACAGAGACCTTTTACGAGTATATCACAAACGTGTTTTATCCGTGGCTTATCAGTGAAAAGGTTGAGTTTCCAGTTGTTATATTTCTGGATAATCACTCTTCGCACATAAACATACCTCTAGTGAGATTTTGTCGagataagaaaatagaatTGATTGGGCTTTTTCCAAACTCAACTCATATTATGCAGCCTCTCGACATATCATTCTTCCATCCTTTTAAACAAGCTTGGAAAAAAGCTGTGCCAAAATGGAAAAATCAGCAGAATGTTATGCGCTTGAAAAAAGAAGATTTTCCTATAGTTTTGAAATTCACACTGGACAATATGGAAGAAAAGAAAGCTGTTATCAGTGGTTTTAAAGCATCTGGGCTATGGCCTTTTAATCCTCATGCTGTAGATTATGACGTTctgaagaaaaggaaaaaaagaaaagagtccTTAGATCAGCAAGAAGATTCGAGGGATTTGACTGAGACTGAAAGAAGaaagtttttgcaaaatttcgaAAACAATTTGTCTGCCGAACTActcttagaatttaaaaatgctttatCTAAAGGATCTTGGACTGGTGACATTGAAAAGAAAGCTTTATTTGAATACTATGttcaaataaatcaaatatccaCCGgtaatatttcaaaaacaaaaccaacggtgaaaaatattgaaattttacatacCCATAAAGTTAGACTAGTTTCACAAGAAactgataaagaaaatatccGTATTAATCAACTCTTATCTACGAATGAATCTACTGCGAACGACACTACTCCTAAAAGTGATTTGATACAAcctatttatttctttgaacCTGAAGCTTCACCTGATTTGATCAATGAGTCTGTTATTGAAgatgattataaaatagtttctGAAGTTTTATACGTACCTGAcaatgaaaaagatttattagaaCTAGTCTGTGATACTTCTACTGGTGATACTTCTACGATTATTCCATTAGATGTAGATTCTATCGATTTTCCTTCTCAAAAGAATCAAAGTATTCTACAGCAGTTCGGTActtctttagaaaataatcaaatagAGCGTAAGGATATAATTCAAATCAAACCAGAGAGTATTGGTATGATCAGTTCTTCAAGAAACAATAACACTGAAAGCAATAATAATCGGTCTATGGTAGATAATATCTTACCAGATGACTTATCACATaagaaagagaatatttctgtaaatactAATCAAGCTGTTGATTTTAGTCTTGCAGATGATTTTTCCGAAGCGTTTACTCtcccattaaaatatttaccctCCAAAAAAAGGAGTAAAGTTGAAGCTTTAGGAAAATCAAAACTACCATCTGCTGTGACTTCCGATAAATGGTTCAATCAtcatttacaaaaagaaaaacttcaggaaattaaaaaagaaaagataaaaaagaagaaggaattacaagaacagaaaaaaaaactagcaaaagaaaagaaagaattacaagaaaaaatgaaagaaattcaaaaaaaaattaaacaagaaatacaataa
- Protein Sequence
- MHSEKIRKKDQQEKQTCKSLKRSKEKKANKIKQKSMVFVNNPQKVSKKKKTKRLNYTSDDMDHALKAIDSGVSLRKAAAAFGVPAATLGRKKNNPDAIKRKTGPETVLSKNEEDDIVNWVLYRAERGMPVTKTELLDSVQKFVTLLQKKTPFKENRPSRHWYEGFRKRHPQLTMRKPQHLSLNRATVSKEDLQEWFSDQKKYLKEKNLLEISSTRVFNCDETNIILCPDSEKVLIEVGSRSVYTITDAGKESLTVLFMYAANGVRAPPMLMYAYKGDVPKKIVENTPKSWGIGISENGWMTTETFYEYITNVFYPWLISEKVEFPVVIFLDNHSSHINIPLVRFCRDKKIELIGLFPNSTHIMQPLDISFFHPFKQAWKKAVPKWKNQQNVMRLKKEDFPIVLKFTLDNMEEKKAVISGFKASGLWPFNPHAVDYDVLKKRKKRKESLDQQEDSRDLTETERRKFLQNFENNLSAELLLEFKNALSKGSWTGDIEKKALFEYYVQINQISTGNISKTKPTVKNIEILHTHKVRLVSQETDKENIRINQLLSTNESTANDTTPKSDLIQPIYFFEPEASPDLINESVIEDDYKIVSEVLYVPDNEKDLLELVCDTSTGDTSTIIPLDVDSIDFPSQKNQSILQQFGTSLENNQIERKDIIQIKPESIGMISSSRNNNTESNNNRSMVDNILPDDLSHKKENISVNTNQAVDFSLADDFSEAFTLPLKYLPSKKRSKVEALGKSKLPSAVTSDKWFNHHLQKEKLQEIKKEKIKKKKELQEQKKKLAKEKKELQEKMKEIQKKIKQEIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -