Malt042211.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:37758892-37762442[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.18 13 7.9 3.5 1 23 234 256 234 256 0.99 2 17 0.01 0.72 11.9 5.1 1 23 295 318 295 318 0.97 3 17 0.0022 0.16 14.0 2.3 1 23 327 349 327 349 0.98 4 17 0.017 1.2 11.2 6.9 1 23 358 380 358 380 0.98 5 17 3 2.2e+02 4.1 3.5 1 23 388 410 388 410 0.97 6 17 0.37 27 6.9 5.0 1 23 419 442 419 442 0.98 7 17 0.04 2.9 10.0 2.4 1 23 451 473 451 473 0.98 8 17 0.046 3.3 9.8 1.0 2 23 483 504 482 504 0.96 9 17 0.2 14 7.8 4.8 1 23 513 535 513 536 0.93 10 17 0.0066 0.48 12.4 3.8 1 23 545 567 545 567 0.98 11 17 0.03 2.2 10.4 3.6 1 23 607 629 607 629 0.97 12 17 0.013 0.92 11.6 5.8 1 23 638 660 638 660 0.98 13 17 1.9 1.4e+02 4.7 5.1 1 23 694 716 694 716 0.96 14 17 0.44 32 6.7 7.3 1 21 725 745 725 747 0.95 15 17 0.093 6.7 8.8 5.7 1 23 766 788 766 788 0.98 16 17 0.86 63 5.8 4.6 1 23 797 819 797 819 0.98 17 17 0.012 0.85 11.7 3.7 1 23 828 850 828 850 0.98
Sequence Information
- Coding Sequence
- ATGATTTTAGAAGTTTATGTTGAGGCTAGTAGGATAATCTTGACTTTGACAGCAGGGCAATCATGTATGTATAACATTTGTTCGTTGAAAGTAATGGAAgcattcaaatttaaatcaatGTGTCTCTATACTGACAGCACAATAGTTCCGTATGTTGGAGGTGGCACAGATTGTACAGTTGACATAGAAGACATTTATGCAGCGGAAAAAAGAGACATACAATTAATAGACACATCAAAATGTAGAATTTGTAGGTTATGTTTACAGTTAATTAGCGGCGAATTTATGCCAGTTTCTCACTTAAAAGTTGATATGATCAAGAAATATGTTCCCGAAATAAATTTTGAGGTCACTGAAGATCCTGTTATTTGCAAACAATGTTTAGATTCCAGAGGCATTCACGGTGGTTTTAATTTCAAGACGAATCATAATACCGAAGCCTCTGAATGCGTAGGCTTGGAATCGTCAAGTTGGAGCATTACAAATGAAGAGATCAACATTAAAACTGACGAAAGTGAAGAAGAAGAGTTGATGCAAACTGAATCTGAAGCCACAGCAACAATTAAAATCGAATATAACAATATAGAATCGAGAGATAACGAGGAGAGTAACAAACCTCTGAACGCTTCAGCCTATGAAGAAAAACACTGTGATATTTTCAAAGTAAATGAACAAATCTGTACACTAGATAAAAGTATGTACAAATGTGACTTGTGCGAATTTACGACCAAGTTTATGTACAGGCTTAAAAATCACCAGTTGAAACACACGGACTCAGGAGTGCATATGTACACGTGTGATTCATGCGATTTTGAGACCAGATATAAAAAGTGTATTGATCGCCACAAGTTGCAACACTTAAGTCCCTCGGAAGtgcaaatgtacaagtgtgatttctgcgattttaaaactaaatataaggaCAATTTTAGAACGCACCAAGAGAAGAAACACCCAGACCTGTTAAAAAATCAGATGTACACGTGTGATTCgtgtgattttaaaacaaaatatgaggATAACCTTAAAAATCATCAATTGAAACATAAAGAGGTCCCCAAAGTGCATAACTATACGTGCGATAAGTGTCATTTTACTACCAAGTTTAAGTACACACTTAAGAATCACCTGTTGAAACATGCAGATTCAAAAGTGCAGATATACAAGTGCGATTTGTGTGATTTCGAGAGCAAATATCAGAGGTGTATTGATCGCCACCAATTGCAACACTTAAGGCCCTCAGAAGTGCATACATATAAGTGTGATTTCTGCGATTTTAAAACCAAATATAATTACAGTATTAGATACCACCAGCAGAAGAAGCACCCAGACCAGTTAAAAATACAAGTGTATGAGTGCAATTcgtgtaattttaaaacaacATATGAGGATAGCTTTAAGATTCATCAATTGAAACACGCAGAGCCTCCAAAAGTAAAAACACTGAAGTGTGATTTGTGCGATTTTGTGACCAAGGCCAATTCCAAGCTTAAAGAGCACAAGTTGAAACATGCACACCCTTCAGAGGTGCATATTTACAAGTGCGACTTGTGCGACTTTgaaactaaatacaaaaattcttttaaGCGTCACAAGGTGGAACACCACTCAAATCCTTCAGAATTAGCGATTTATGAATGTACATTTTGtgatttcaaaacaaaatataaaggtaattttaaatcacACCAAATCAAGCACAGTGGGTGTTTAAAAGAGCTAACGTACAAGTGTGAATTGTGTGATTTTGCAACTATATTCAAGCATAAATTCAAGTTCCATCAGCTGAAACACGAAAACCCCGCAGTATTGCAGACGCACATGTGCGAAGTCTGTGGTTACAGGACCATGTATAGGTATAGACTTCGGCGGCACCAACTAAAACACAAGAGTACCTCAGAAGTCACGATGCACAAGTGCGATCTGtgtgattttaaaactaaatataaggaTAATTTTCGAACGCACCAGTTAAGACATAACAGACCTCCGAAACCGTGCAAAAGGGATTTTACGATCACATCTAAGGACCTTGAAGACCGTGAGTTGCCAGTGAAGGACCCTCCaggaataaaaatgtataaatgcaTTTTGTGCAAATACAAGACAAAATATAAGGGTAATTTCAAGATACATCATTTGTCACACGCTAACATTTCAGACGTACACTCGTACAAATGTGATCAATGCGATTATGAAACCAAATACAAGCATAGCCTGAGATATCATTTGAAATGCCACGAAGATAGTGCTAAAGAGCCGTCTTCGAAACGTGACCTTTCCAAAATGAAGGTGTACGAATGCGATAAATGCAAACATAAAAGTAGAACTAGATACGCTTTTAGGATGCATCAGTCAAGACACAAGGTTCCTTCAAAAGTATTAATTTACAAGTGTAATTTGTgtagttttaaaacaaaatataggaACTACATGAGCAGCCACCGGAAGATACACGCAGATCCTTCAAATGTCACACTGTACAAATGTGATCTGTGTGATTTCAAGACCAAATACAAAACCAGTCTCAAGTATCACCAGTTGAACCACAGCACAGGCCCCTGGAGTGCAGTGAATGTGAGTTCGGAGGAAGATGTAGTAACAAGTTGTAGCAAAAAAGTGGTGAGTGAAATCACCTTCTTTATATTCAAGAAGAGAGAATGA
- Protein Sequence
- MILEVYVEASRIILTLTAGQSCMYNICSLKVMEAFKFKSMCLYTDSTIVPYVGGGTDCTVDIEDIYAAEKRDIQLIDTSKCRICRLCLQLISGEFMPVSHLKVDMIKKYVPEINFEVTEDPVICKQCLDSRGIHGGFNFKTNHNTEASECVGLESSSWSITNEEINIKTDESEEEELMQTESEATATIKIEYNNIESRDNEESNKPLNASAYEEKHCDIFKVNEQICTLDKSMYKCDLCEFTTKFMYRLKNHQLKHTDSGVHMYTCDSCDFETRYKKCIDRHKLQHLSPSEVQMYKCDFCDFKTKYKDNFRTHQEKKHPDLLKNQMYTCDSCDFKTKYEDNLKNHQLKHKEVPKVHNYTCDKCHFTTKFKYTLKNHLLKHADSKVQIYKCDLCDFESKYQRCIDRHQLQHLRPSEVHTYKCDFCDFKTKYNYSIRYHQQKKHPDQLKIQVYECNSCNFKTTYEDSFKIHQLKHAEPPKVKTLKCDLCDFVTKANSKLKEHKLKHAHPSEVHIYKCDLCDFETKYKNSFKRHKVEHHSNPSELAIYECTFCDFKTKYKGNFKSHQIKHSGCLKELTYKCELCDFATIFKHKFKFHQLKHENPAVLQTHMCEVCGYRTMYRYRLRRHQLKHKSTSEVTMHKCDLCDFKTKYKDNFRTHQLRHNRPPKPCKRDFTITSKDLEDRELPVKDPPGIKMYKCILCKYKTKYKGNFKIHHLSHANISDVHSYKCDQCDYETKYKHSLRYHLKCHEDSAKEPSSKRDLSKMKVYECDKCKHKSRTRYAFRMHQSRHKVPSKVLIYKCNLCSFKTKYRNYMSSHRKIHADPSNVTLYKCDLCDFKTKYKTSLKYHQLNHSTGPWSAVNVSSEEDVVTSCSKKVVSEITFFIFKKRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -