Malt042807.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:43462502-43493006[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.042 3.1 9.9 5.0 1 23 204 226 204 226 0.98 2 17 0.079 5.7 9.1 4.4 1 23 235 258 235 258 0.97 3 17 1.6 1.2e+02 4.9 4.8 1 23 267 290 267 290 0.97 4 17 0.061 4.4 9.4 5.5 1 23 299 321 299 321 0.98 5 17 0.19 13 7.9 6.1 2 23 515 536 514 536 0.96 6 17 0.22 16 7.6 3.4 1 20 545 564 545 566 0.95 7 17 0.0053 0.39 12.7 4.1 1 23 734 756 734 756 0.99 8 17 0.04 2.9 10.0 2.6 2 23 766 788 765 788 0.95 9 17 0.077 5.6 9.1 2.9 2 23 798 819 797 819 0.97 10 17 0.021 1.5 10.8 6.3 1 23 828 850 828 850 0.98 11 17 0.026 1.9 10.6 3.3 2 23 860 882 859 882 0.96 12 17 0.22 16 7.7 5.7 1 23 891 913 891 913 0.98 13 17 0.014 1 11.4 3.5 2 23 923 944 922 944 0.97 14 17 0.098 7.1 8.8 5.2 1 23 953 976 953 976 0.96 15 17 0.0088 0.63 12.1 3.0 2 23 986 1008 985 1008 0.96 16 17 0.0078 0.56 12.2 3.0 1 23 1018 1042 1018 1042 0.91 17 17 1.8 1.3e+02 4.8 5.9 1 23 1047 1070 1047 1070 0.97
Sequence Information
- Coding Sequence
- ATGAAGGCAGAAGTTGAGGATGTCGATTATGGCAAAGCCATGGAAAGTCTGCCTGATATTAAACATGACTATGTTGATATCATATTTGAACACAGTTATAGTGCCACCccattacaaaatttaaaagatgAATCTGTCGACTGGACTGGTACAAGCCTATTAAGGAACTGTTTGAATGGGAAGGAGgaaattaaagatatttgtgAGGACAACGCCATAGAAAGTTTGTCCAGTATTAAATGggaaaatattgaaatcaaaTCAGAAGAGGATTATAGTGGCACCTGCTTACAGAATTTAAAGGATGAACCTGTCGACTGCACTGGCACAAGTTTATTAACAGACTGTGTTAAGAATATTTGTGATGACAATGCCACAGAAAGTTTGTCCAACATTAAATGTGAAGATATTGAAATCAAATCGGAAGAGGATTATAGTGACACCCCATTACAGAACTGGAAAAATGAACCTGGCGACTGCACAAACAGATGCCAATCTAAGTATGTAGaaacaacaaataattatgCCGTTAAGCACGAAAGGAATCGATACGATCCAAGAGACAAAAAAAGCACGTTAAAGCACAGAGTTATCtttgaaaaaaagttgtataaatGTAACTCTTGTGACTATGAAACTTATCAAAGGAAAAGCTTTACTAGACATCAATATAAACACAAAAACGTCCCTGAAGAACTGATGTATCATTGTGATTCATGCGATTATAAAACCAATTATAAGGCCTATCTTACAACACACCAGTCTACGAAACATAAAGATATCACCGAAGAAGATATGCATAAATGTGATTCGTGTGTTTTTAGAACGATATATAAGGCCAACCTTATGCATCACCAGTTAAgaaaacataaagatatatCTGAAGAAGATATGCATAAATGTGATTCGTGtgattttaaaacgaaatataatAATTCCCTTACAAAACACCAGttaaaacataaagatatcCCTGAAGAAGATATGCATAAATGTGATTCGTGTGATTTTAAAACGAAATACAACGTTATGGATACAGGTGGTGGTTCGTTTGTCACCCACATGATTGTCGTAAATGACTGTCTTGACACGAAGGAAGAAGTTGAGGATGTCGATTATGGCAAAACCGTGGAAAGTCTGCTTGATATTAAACATGACTATGTTGATATCAGATTTGAACACAATTATAGTGCCATCCACTTAGAGAATTTAAAAGATGTACCTGTCGACTGGACTGACACAAGTCTATTAAGGAGCTGTTTGAATGGGAAGGAGgaaattaaagatatttgtgACGACGACGCCATAGAAAGTTTGTCCAGTattaaatgtgaaaatatcgAAATCAAATCAGAAGAGGATTATAGTGACACTCCATTACAGAACTTGAAAGATGAACTTGTCGACTGCACAGACGAATGCCAATCTGAGTATGTAGAAACAACAAATAATTCTGCCGTTAAGCACAAAAGGAATCGATATGATCCAAGAGACAAAAAAAGAATGTTAAAGCACAGAGTTATCTTTGAAAAACAGTTGTGTAAATGTAGCTCTTGTGACTATGAAACTTATCAAAAGAAATATCTTACTAGACATCAATATAAACACAAAGACGTCCCTGAAGAACTGATTTATCATTGTGacttgtgtgattataaaacccaTTATAAGCGCAATCTTGCAAAACACCAGTCTAACAACGTTATGGATACAGGTGGTGGTTCGTTTGTCACCCACATGATTGTCGTAAATGACTGTCTTGACACGAAGGAAGAAGTTGAGGATGTCGATTATGGCAAAACCATGGAAAGTCTGCTTGATATTAAACATGACTATGTTGATATCAGATTTGAACACAATTATAGTGCCACCCCATTACAGAATTTAAGAGATGAACCTGTCGACTGGAATGGCACAAGTCTATTAAGGAGCTGTTTGAATGAGAAGGAGcaaattaaagatatttgtgACGACCATGCCATAGAAAGTTTGTCCAATattaaatgtgaaaatatcgAAATCAAATCAGAAGAGGATTATAGTGACACTCCATTACAGAACTTGAAAGATGAACCTGTCGACTGCACAGACAAATGCCAATCTGAGTATAATTATGCCGTTAAGCACGAAAGAAATCGATACGATCCAAGAGACAAAAAAAGCACGTTAAAGTACAGAGTCATCTTTGCAATGAGGTTGTATAAATGTAACTCTTGTGACTTTCAAACTGATCGAAAGTATTACCTTACAAAACACCAGttaaaacataaagatatcCCTGAAGAAGATACGCTTAAATGTGATTCGTGtgattttaaaacgaaatataagaACTACCTTACAAAACACCagttaataaaacataaagataTCCCTGAAGAAGATATGCTTAAATGTGATTCGTGtgattttaaaacgaaatataagtTCAGCCTTATGCAACACCAGTTGAAACATAAAGATATCCCTGAAGAAGATATGCATAAATGTGATTCGTGtgattttaaaacgaaatataagtATTACCTTACAAAACACCAGTTAACACATAAAGATATCCCTGAAGAAGATATGCTTAAATGTGATCTGTGCgattttaaaacgaaatataagaAATACCTTACACAACACCAGCTTAGGAAACATAAAGATATCGCTGAAGGAGATATGCATAAATGTGATTCGTGtgattttaaaacgaaatataagtTCAGCCTTATGCAACACCAGTTGAAACATAAAGGTATCCCTAAAGAAGATATGCTTAAATGTGATTCGTGtgattttaaaacgaaatataagtATTACCTTACAAAACACCAGttaaaacataaagatatcCCTGAAGGAGATATGCATAAATGTGATTCGTGtgattttaaaacgaaatataagaACTACCTTACAAAACACCAGTTAGTAAAACATAAAGATATCCCTGAAGAAGATATGCTTAAATGTGAtctgtgtgattataaaacgaaatataagaAATACCTTACACAACACCAGCTTAGGAAACATAAAGATATCGCTGAAGGAGATGGAGGGcataaatgtgatttgtgtgattataaaaccactTTTAAGAACAACCTTACACAGCATCAGTTAAAAGACATTCACAAAGTGAAGATATATCGATGTGTTTTGTGCAATTTCAAAACGAGATATAAGAGCAACTGTACTAAACACCAGTTGATGCAACATAAAGATATCTCCGAAGAAGATTtgtataaatgtgattcgtACGATTATAAAACGAAATGTAAGTCCAACCTTATTCATAAGCGGTTAGTGAAACATAAAGGTATCTaa
- Protein Sequence
- MKAEVEDVDYGKAMESLPDIKHDYVDIIFEHSYSATPLQNLKDESVDWTGTSLLRNCLNGKEEIKDICEDNAIESLSSIKWENIEIKSEEDYSGTCLQNLKDEPVDCTGTSLLTDCVKNICDDNATESLSNIKCEDIEIKSEEDYSDTPLQNWKNEPGDCTNRCQSKYVETTNNYAVKHERNRYDPRDKKSTLKHRVIFEKKLYKCNSCDYETYQRKSFTRHQYKHKNVPEELMYHCDSCDYKTNYKAYLTTHQSTKHKDITEEDMHKCDSCVFRTIYKANLMHHQLRKHKDISEEDMHKCDSCDFKTKYNNSLTKHQLKHKDIPEEDMHKCDSCDFKTKYNVMDTGGGSFVTHMIVVNDCLDTKEEVEDVDYGKTVESLLDIKHDYVDIRFEHNYSAIHLENLKDVPVDWTDTSLLRSCLNGKEEIKDICDDDAIESLSSIKCENIEIKSEEDYSDTPLQNLKDELVDCTDECQSEYVETTNNSAVKHKRNRYDPRDKKRMLKHRVIFEKQLCKCSSCDYETYQKKYLTRHQYKHKDVPEELIYHCDLCDYKTHYKRNLAKHQSNNVMDTGGGSFVTHMIVVNDCLDTKEEVEDVDYGKTMESLLDIKHDYVDIRFEHNYSATPLQNLRDEPVDWNGTSLLRSCLNEKEQIKDICDDHAIESLSNIKCENIEIKSEEDYSDTPLQNLKDEPVDCTDKCQSEYNYAVKHERNRYDPRDKKSTLKYRVIFAMRLYKCNSCDFQTDRKYYLTKHQLKHKDIPEEDTLKCDSCDFKTKYKNYLTKHQLIKHKDIPEEDMLKCDSCDFKTKYKFSLMQHQLKHKDIPEEDMHKCDSCDFKTKYKYYLTKHQLTHKDIPEEDMLKCDLCDFKTKYKKYLTQHQLRKHKDIAEGDMHKCDSCDFKTKYKFSLMQHQLKHKGIPKEDMLKCDSCDFKTKYKYYLTKHQLKHKDIPEGDMHKCDSCDFKTKYKNYLTKHQLVKHKDIPEEDMLKCDLCDYKTKYKKYLTQHQLRKHKDIAEGDGGHKCDLCDYKTTFKNNLTQHQLKDIHKVKIYRCVLCNFKTRYKSNCTKHQLMQHKDISEEDLYKCDSYDYKTKCKSNLIHKRLVKHKGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -