Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:38167537-38171405[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0098 0.71 11.9 4.5 1 23 335 357 335 357 0.98

2 12 0.00051 0.037 15.9 1.6 1 23 366 388 366 388 0.97

3 12 0.00048 0.035 16.0 4.5 1 23 397 419 397 419 0.98

4 12 0.0063 0.46 12.5 2.7 1 23 428 450 428 450 0.98

5 12 0.022 1.6 10.8 5.4 1 23 490 512 490 512 0.97

6 12 0.0023 0.17 13.9 1.5 1 23 551 573 551 573 0.98

7 12 0.00042 0.031 16.2 2.7 1 23 613 635 613 635 0.99

8 12 0.042 3 9.9 0.6 1 22 644 665 644 665 0.95

9 12 0.0025 0.18 13.8 2.5 1 23 675 697 675 697 0.99

10 12 0.23 17 7.6 7.9 1 23 706 728 706 728 0.98

11 12 0.0016 0.11 14.4 2.6 1 23 737 759 737 759 0.98

12 12 1 75 5.5 4.2 1 19 768 786 768 789 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0098	0.71	11.9	4.5	1	23	335	357	335	357	0.98
2	12	0.00051	0.037	15.9	1.6	1	23	366	388	366	388	0.97
3	12	0.00048	0.035	16.0	4.5	1	23	397	419	397	419	0.98
4	12	0.0063	0.46	12.5	2.7	1	23	428	450	428	450	0.98
5	12	0.022	1.6	10.8	5.4	1	23	490	512	490	512	0.97
6	12	0.0023	0.17	13.9	1.5	1	23	551	573	551	573	0.98
7	12	0.00042	0.031	16.2	2.7	1	23	613	635	613	635	0.99
8	12	0.042	3	9.9	0.6	1	22	644	665	644	665	0.95
9	12	0.0025	0.18	13.8	2.5	1	23	675	697	675	697	0.99
10	12	0.23	17	7.6	7.9	1	23	706	728	706	728	0.98
11	12	0.0016	0.11	14.4	2.6	1	23	737	759	737	759	0.98
12	12	1	75	5.5	4.2	1	19	768	786	768	789	0.95

Sequence Information

Coding Sequence: ATGGAAGCAGAAACCTTAAAAGGAACATGTTGCAGACTGTGTCTTACTGCTATAAGAGATACTAATTGCGAACTAGTAGGACAAACCGAAAGGAAGTTTGTAGAAGTTGTTTTTTCAAATCTGcaTTTAGAAGAGAGCGATAAACACTTCACGTGTAAAGAATGCTCCGTATCATTATCAgctgcttttaattttaaatcaatgtgTATGAATACTGAGGATATTATTTTATGTGTTAATTCCAGTAAAGGTCCAGTGGTTGACTTAAAAGAAGTTTACTtaaaacaaaaaggaaatagtCAGTTAATTGATATAGTAGAAAATTCGAGAATTTGTCGATTATGTATTCAGTTGGTTACTTACGGATTTGTATCACTAAATGAAGTGGATATTGACACAATTAACAAGTATATATCACATGCTaACCTCAGTGCTACCAGAGACCCCGTAATATGCGGAATATGTTTCAATTCGCTCCGCAATTGTGAAAACTTCATCAAGTACTGTCTCGATATGCAAGAAAAACATAAACATGCTGACAAACAGTTCTGTATTAAAACGAACCAAGTTGAAATAAAACGGGAAGAAAATCAGGATGCACAAGAGGAATATCGAAACATTGATAAGCCGTCTTATATTagatttgaagaaattaaaataaaattggaaaacgGTCTCATAGCGCAAGAGGAATATAAAAACAGTGATAATCAGACTTATGTAAAAAGTGAagaaattgaagtaaaaatggATGAAGGCAGTCaggataaatataaaattattgaagatCAGACTCATATTAAATATGAAGAAACTGATGTAAAGGAAGATGATCAAGAAAGttgtttttcagaaaataaagaagaaataaacaatGAATTAGTAAAACACGAAATAGAGATTAATAAAACCTTTACGACGTCAATATCAGTCTGTAATGGTTTAGAAGGAGAAAAATATCAATGCGGTACAATGCATAAAAATCTCTCAGAAGTAAAAACGCACAAATGCAATACATGCAGTTACGAAACAAAGTATAAAAGTGCTTTAAAAATGCATCAATTAagacacaaaaatatattagaagTCCAAATGCACAAATGTGAGACATGTGGTTATGAAACGAAATACAAAAGTGCTTTAAAAGTGCATCAGATATTGCACAAAGACCCTTCAGAAatacaaatgtacaaatgtgatgtGTGTAATTACGAAAGTAAGCATAAAGATCATTTGATAAAACATCAGATGTTGCATAAAGACCCATCGGAAAttcaaatgtacaagtgtgatacctgtaattttgaaagtaaatataaatatagccTGAGAGATCATCAGGCAAAGCACAAAGACCCTTcggaaatccaaatgtacacgTGTGATATCTGTTGTTATGAAACTAGGCATGTGAGTTATATGAAAGTGCATCGATTAGCACACGAAGACCCTCTGAAAATcaaaatgtacaagtgtgataaATGCGAATttgaaactaaaaacaaaagTTGTCTAAAGAAGCATAATTTAATGCACAAAGAGATCTTACAAGTTCATGTACACAGGTGTGATACATGTAGTTATGCATGTAAGCAAATGAAGCATCTAAAACCCCATCAATTACACAAAGACTCTTCAGAACTTcgaatgtacaagtgtgataaGTGTCCTTATGAAACTAAACATAAAGGCGGCTTGAAGGTGcatgaaataaaacataaagAAATGTCAGAAATACAAATGTATAAATGTTACATGTGCAGTTATGAATCAAAGTATAAGGGCCGTCTAAAATTTCATCAGTTGAAACACATGAAATCTTCAGAAGTCccaatgtacaaatgtgataacTGTACTTacgaaactaaatataaaagttcTCTCAGAAATCACCAATTAATGCACAAAGACCCTTCAGAAATTCCCGTGTACAAATGTGATACATGTGGTTTTGGaactaaatataagaaaaatatggaTGTGCATCAACTAACGTACAAGGACATTTCCGAAATCCGAATGTACAAATGCGATGTGTGCAGTTATGAATCTAAATATAAGAGGCATCTTGCAATTCATCAATTGACACACAAAGATCCGTCTGAAAttcaaatgtacaagtgtgatactTGTACCTACGAAGCTAAACATAAGTGTCATCTAAAAGTGCATCAGTTATCACACAGAGACCCTTCagaaattcaaatgtacaagtgtgataccTGCAActttaaatctaaatttaagAATAATCTGAAAGCTCACCAATTAATTCACAGAGATCCTtcagaaatccaaatgtacaggtGTGATACATGTGgttatgaaactaaatataagaaaactatcaaaaaacataattgttacACTGCTATACGACGTTCTAATTAA
Protein Sequence: MEAETLKGTCCRLCLTAIRDTNCELVGQTERKFVEVVFSNLHLEESDKHFTCKECSVSLSAAFNFKSMCMNTEDIILCVNSSKGPVVDLKEVYLKQKGNSQLIDIVENSRICRLCIQLVTYGFVSLNEVDIDTINKYISHANLSATRDPVICGICFNSLRNCENFIKYCLDMQEKHKHADKQFCIKTNQVEIKREENQDAQEEYRNIDKPSYIRFEEIKIKLENGLIAQEEYKNSDNQTYVKSEEIEVKMDEGSQDKYKIIEDQTHIKYEETDVKEDDQESCFSENKEEINNELVKHEIEINKTFTTSISVCNGLEGEKYQCGTMHKNLSEVKTHKCNTCSYETKYKSALKMHQLRHKNILEVQMHKCETCGYETKYKSALKVHQILHKDPSEIQMYKCDVCNYESKHKDHLIKHQMLHKDPSEIQMYKCDTCNFESKYKYSLRDHQAKHKDPSEIQMYTCDICCYETRHVSYMKVHRLAHEDPLKIKMYKCDKCEFETKNKSCLKKHNLMHKEILQVHVHRCDTCSYACKQMKHLKPHQLHKDSSELRMYKCDKCPYETKHKGGLKVHEIKHKEMSEIQMYKCYMCSYESKYKGRLKFHQLKHMKSSEVPMYKCDNCTYETKYKSSLRNHQLMHKDPSEIPVYKCDTCGFGTKYKKNMDVHQLTYKDISEIRMYKCDVCSYESKYKRHLAIHQLTHKDPSEIQMYKCDTCTYEAKHKCHLKVHQLSHRDPSEIQMYKCDTCNFKSKFKNNLKAHQLIHRDPSEIQMYRCDTCGYETKYKKTIKKHNCYTAIRRSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -