Malt042806.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:43451769-43456433[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.2 15 7.8 4.5 1 23 147 169 147 169 0.98 2 14 0.003 0.22 13.5 3.3 1 23 178 201 178 201 0.95 3 14 0.023 1.7 10.8 5.4 1 23 210 233 210 233 0.97 4 14 0.16 11 8.1 5.9 1 23 274 297 274 297 0.96 5 14 0.00054 0.039 15.9 3.2 1 23 306 329 306 329 0.97 6 14 0.18 13 7.9 4.1 1 23 338 361 338 361 0.95 7 14 0.012 0.87 11.6 3.5 1 23 370 392 370 392 0.97 8 14 0.003 0.22 13.5 2.8 1 23 401 424 401 424 0.97 9 14 0.015 1.1 11.3 5.7 1 23 433 456 433 456 0.97 10 14 0.00054 0.039 15.9 3.2 1 23 465 488 465 488 0.97 11 14 0.73 53 6.0 2.4 1 20 497 516 497 520 0.93 12 14 0.00069 0.05 15.5 3.7 1 23 529 551 529 551 0.99 13 14 0.00058 0.042 15.8 4.9 1 23 560 583 560 583 0.97 14 14 4.8 3.5e+02 3.4 6.0 1 23 592 615 592 615 0.93
Sequence Information
- Coding Sequence
- ATGGATACCGGTGTTAATTCATTCACCACCCACACAAATTTCTTAAATGACGGTTTTGACATGAAAGAAGAAGTTGAAGATGTCGATTATGGCAAAGGTATGGAAATGCTGCCCGATATTAAACAGGAAGATGTTAAAATCAAGTCTGAAGAGTATTATAGTGCCACCTGCTTACAGAATTTAAAAGACGAACCCGTCGACTGCACTGGCACAAGCTTCTTAATGAACTGTTTTAATGTGAAGGAGGAAATTAAGGATATTTGTGATGACAATGCCACAGAAAGTTTGTCCAACATTAAATCTGAAGATATTGAAATCATATCGGAAGAGGATTATATTGACACTCCATTACAGAACTTGAAAGATGAACCTGTCGACTGTACAGACGAATGCCAATTCGAGTATGTagaaacaacaaataattttgaaaaagagtTGTATAAATGTAACTCTTGTGACTATGAAACTTATCTTAGGAAAAGCTTTACTAGACATCAATATAAACACAAAGACGTCCCTGAAGAACTGATTTATCATTGTGacttgtgtgattataaaaccaatTATAAGGGCAATCTTACAAAACACCAGTCTTGGAAACATAAAGATATCACCGAAGAAGATATGCATAAATGTGATTCGTGTGgttttaaaacgaaatataaaaaCTACCTTACAAAACACCAGTTAATGAAACATAAAGATATCCCTGAAGAAGATATGCTTAAATGTGAttcgtgtgattataaaacgaaATGTAAGTCCATCCTTAAGcaacaccacataataaaacataaagataTCTCTGAAGAAGATATGCATACATGTGATTCGTGTGgttttaaaacgaaatataagaAATACCTTACACAACACCGGCTTAGGAAACATAAAAATATCGCTGAAGAAGATATGCATAAATGTGATTGGTGTGGTTATAAAACGAAATACAAGTCCACCCTTATGCAACACcaattaatgcaacataaagATATCCCTGAAGAAGATATGCATAGATGTGACTTATGtgattttaaaacgaaatataagtCCGTCCTTACAGCACACAAGTCCAGGAAACATATAGAAATGGCCGAAGAAGATATGCATACATGTGctttgtgtgattataaaaccactTTTAAGAACGACCTAACACAGCATCAGTTAAAACACAAAGACATTCACAAAGTGAAGATGTATCAATGTGATTTGTGCGATTTCAAAACGAGATATCAGAGCAACCGTACTAAACACCAGTTAATGCAACATAAATATATCTCCGAAGAAGATATGCATAAATGTGATCTGTGTGgttttaaaacgaaatataagaAATACCTTACGCAACACCAGCTTAGGAAACATAAAGATATCGCTGAAGAAGATATGCATAAATGTGATTGGTGTGGTTATAAAACGAAATACAAGTCCACCCTTATGCAACACcaattaatgcaacataaagATATCCCTGAAGAAGATATGCATAAATGTGATTTATGTGATTATAAAGCGAAATATAAGTTCGGCCTTACAGCACACAAGCCCAGGAAACATATAGAAATGGCCAAAGAAGATATGTATAAATGTGctttgtgtgattataaaaccatttataagaGCCATCTTACACAGCATCAGTTAAAACACAAAGACATTCACAAAGTGAAGATGCAtcaatgtgatttgtgtgatttcAAAACGAAATATAAGAGCAACCTTAGAAAACACCAGTTAatgaaacataaatataaatccgAAGAAGATATGCATAAATGTGATTCGTGCGGTTATAAAACGAAATGTAAGTCCAGCCTTATTCAACACAAGTTACTGAAACATAAAGATATCCCTGAATAA
- Protein Sequence
- MDTGVNSFTTHTNFLNDGFDMKEEVEDVDYGKGMEMLPDIKQEDVKIKSEEYYSATCLQNLKDEPVDCTGTSFLMNCFNVKEEIKDICDDNATESLSNIKSEDIEIISEEDYIDTPLQNLKDEPVDCTDECQFEYVETTNNFEKELYKCNSCDYETYLRKSFTRHQYKHKDVPEELIYHCDLCDYKTNYKGNLTKHQSWKHKDITEEDMHKCDSCGFKTKYKNYLTKHQLMKHKDIPEEDMLKCDSCDYKTKCKSILKQHHIIKHKDISEEDMHTCDSCGFKTKYKKYLTQHRLRKHKNIAEEDMHKCDWCGYKTKYKSTLMQHQLMQHKDIPEEDMHRCDLCDFKTKYKSVLTAHKSRKHIEMAEEDMHTCALCDYKTTFKNDLTQHQLKHKDIHKVKMYQCDLCDFKTRYQSNRTKHQLMQHKYISEEDMHKCDLCGFKTKYKKYLTQHQLRKHKDIAEEDMHKCDWCGYKTKYKSTLMQHQLMQHKDIPEEDMHKCDLCDYKAKYKFGLTAHKPRKHIEMAKEDMYKCALCDYKTIYKSHLTQHQLKHKDIHKVKMHQCDLCDFKTKYKSNLRKHQLMKHKYKSEEDMHKCDSCGYKTKCKSSLIQHKLLKHKDIPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -