Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:43414407-43421302[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 2.1 1.5e+02 4.6 5.7 1 23 151 173 151 173 0.98

2 20 0.33 24 7.1 4.8 1 23 182 205 182 205 0.96

3 20 0.022 1.6 10.8 2.9 1 23 214 237 214 237 0.96

4 20 0.034 2.5 10.2 6.9 1 23 246 269 246 269 0.96

5 20 0.0046 0.34 12.9 3.0 1 23 278 301 278 301 0.96

6 20 0.11 8.1 8.6 6.9 1 23 310 333 310 333 0.96

7 20 0.16 12 8.1 6.3 1 23 342 365 342 365 0.96

8 20 2.5 1.8e+02 4.3 9.4 1 23 374 397 374 397 0.97

9 20 0.7 50 6.1 3.7 1 23 406 428 406 428 0.97

10 20 0.0031 0.22 13.5 1.7 1 23 435 458 435 458 0.97

11 20 0.023 1.6 10.8 4.0 1 23 467 490 467 490 0.95

12 20 0.021 1.5 10.9 3.8 1 23 499 522 499 522 0.95

13 20 0.0024 0.17 13.8 2.2 1 23 531 553 531 553 0.99

14 20 0.023 1.6 10.8 3.0 1 23 562 585 562 585 0.97

15 20 0.0085 0.62 12.1 4.5 1 23 777 799 777 799 0.98

16 20 0.039 2.8 10.0 3.6 1 23 808 831 808 831 0.97

17 20 0.022 1.6 10.8 5.5 1 23 840 863 840 863 0.97

18 20 0.0028 0.2 13.6 5.2 1 23 872 894 872 894 0.99

19 20 0.0045 0.32 13.0 4.9 1 23 903 926 903 926 0.97

20 20 0.97 70 5.6 8.5 1 23 935 957 935 957 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	2.1	1.5e+02	4.6	5.7	1	23	151	173	151	173	0.98
2	20	0.33	24	7.1	4.8	1	23	182	205	182	205	0.96
3	20	0.022	1.6	10.8	2.9	1	23	214	237	214	237	0.96
4	20	0.034	2.5	10.2	6.9	1	23	246	269	246	269	0.96
5	20	0.0046	0.34	12.9	3.0	1	23	278	301	278	301	0.96
6	20	0.11	8.1	8.6	6.9	1	23	310	333	310	333	0.96
7	20	0.16	12	8.1	6.3	1	23	342	365	342	365	0.96
8	20	2.5	1.8e+02	4.3	9.4	1	23	374	397	374	397	0.97
9	20	0.7	50	6.1	3.7	1	23	406	428	406	428	0.97
10	20	0.0031	0.22	13.5	1.7	1	23	435	458	435	458	0.97
11	20	0.023	1.6	10.8	4.0	1	23	467	490	467	490	0.95
12	20	0.021	1.5	10.9	3.8	1	23	499	522	499	522	0.95
13	20	0.0024	0.17	13.8	2.2	1	23	531	553	531	553	0.99
14	20	0.023	1.6	10.8	3.0	1	23	562	585	562	585	0.97
15	20	0.0085	0.62	12.1	4.5	1	23	777	799	777	799	0.98
16	20	0.039	2.8	10.0	3.6	1	23	808	831	808	831	0.97
17	20	0.022	1.6	10.8	5.5	1	23	840	863	840	863	0.97
18	20	0.0028	0.2	13.6	5.2	1	23	872	894	872	894	0.99
19	20	0.0045	0.32	13.0	4.9	1	23	903	926	903	926	0.97
20	20	0.97	70	5.6	8.5	1	23	935	957	935	957	0.99

Sequence Information

Coding Sequence: ATGAAGGAAGAACTTGAAGATGTTGATTATGGCAAAGGCTTGGAAAGGCTGTCAAATATTAAACAGGAAAACGTTGAAATCAAATCTGAAGAAAATTACAGTGGCACCTGCGTACAGAATTTAAAAGATGAACCTGTCGACTGCACTGGCACAAGTTTATTAAGGAACTGTTTTAATGTGAAGGAGgaaattaaagatatttgtgACGACAGTGCTATAGAAAGTTTGTCCAATATTAAATGTGAAGATATTGAAATCAAATCAGAAGAGGATTATATtgaCATTCCTTTACAAAACGTAAAAGATGAACCTGTCGACTGCAGAGACGAATGCCTACCTGAgtatgtagaaacaacgaataATTCTGCTGTTAAGCACAAAAGGAATCGATACAATCCAAGAGACAAAAAAAGCACGTTAAAGCACATAGTCACCTTTGAAAAAGAGTTGTTTAAATGTAACTCTTGTGAATATAAAACTTATCTTAGGAAAAGCTTTACTAGACATCAATATAAACACAAAGACGTCCCTGAAGAACTGATGTATCATTGTGATtcatgtgattataaaaccaatTATAAGGCCTATCTTACACAACACCGGTCTAGGAAACATAAAGATATCGCCGAAGAAGATATGCATAAATGTGATTCGTGTGgttttaaaacgaaatataaggCCAGCCTTATGCAACACCagttaataaaacataaaggTATCCCTGAAGAAGATATGCATAAGTGTGAtttatgtgattataaaacgaaatataagtCCTGTCTTAAGCAACACCagttaataaaacataaagataTCCCTGAAGAAGGTATGCATAAATGTGAtttatgtgattataaaacgaaatataatgCCAGCCTTAAGCAACACCagttaataaaacataaagataTCTCTGAAGAAGATATACATAAATGTGAtttatgtgattataaaacgaaatataagaCCAACTTCACACAACACCAGTTTAGGAAACATAAAGATATCGCTGAAGAAGATATGCATAAATGTGATTCGTGTGgttttaaaacgaaatataagtCCTGCCTTATGCAACACCAGTTAGTAAAGCATAAAGATATCTCTGAAGAAGATATGCATAAATGCAACTCGTGTGaatttaaaacgaaatataagaCATGTCTTACAAAACACATGTCTAGGAAACATATAGATATCCCCGAAGAAGatatgtataaatgtgattctTGCGATTATAAAACCTTCTATAAGAAAATTCTTACACGCCATCAGTTAAAACACATTCCCAAAGTGCAGATGTATCcatgtgatttgtgtgatttcaaatcaaaatataagAACAATCTTACAACACATCAGCTAATGAAACATACAGATATGTCCGAAGAAGATATGCATAAATGTGAttcgtgtgattataaaacgaaataCAAGTCCACCCTTATGCAGCACCAATTATTGCAACATACAAATATCCCTGAAGAAGATATGCATAGATGTGAtttatgtgattataaaacgaaatataaatCCGGCCTTACAGCACACAAGTCCAGGAAACATATAGAAATGGCCGAGGAAGATATGTATAAATGTGctttgtgtgattataaaaccactTTTAAGAACGACCTTACACAGCATCAGTTAAAACACAAAGACATTCACAAAGTGAAGATGTATCGATGTGACttgtgtgattttaaaacgaaatatcAGAGCAACCGTTCTAAACACCAGTTGATGCAACATAAATATATCTCCGAAGAAGatatgtataaatgtgattcgtGCGGTTATAAAACGAAATGTAACGTTATGGATACGGATGTTGGTTCTTTCGTCACCTACAAGAATTTCTTAAATGACCGTTTTGACCTGAAAGGAGAAGTTGAAGATGTCGATTACGGCAAAGGCATGGAAAGTCTGCTTGATATTAAAGAGGAAAACTTTGACATCAAATCTGAAGAAAATTATGGTGGTACTCGCTTACAGAATTTAAAAGAGGAACCTGTCGAATGCACTGGCACAAGTTTATTAACGAACTGTTTTAATGTGAAGGAGGATATTAAAGATATTTGTGACGACAGCACTATAGAAGGTTTGTCCAATATTAAATGTGAAGATATTGAAATCAAATCGGAAGAGGATTATATtgaCACTCCTTTACAAAACTTGAAATATGAACCTGTCGACTCCACAGACGAATGCCAACCTGAgtatgtagaaacaacgaataATTCTGCTGTTAAGCACGAAAGGAATCGATACTATCCAAGAGACAAGTACGGCACGTTAAAGCACAGAGTCTTTGAAAAGGAGATGTATAAGTGTAACTCTTGCAACTATGGAACTGATCGAAAGAGAAATTTTACTAGACATCAGTATAGACACAAGAACGTTCCTGAAGAGCTGATGTATCattgtgatttgtgtgattataaaaccatttataaggGCTATCTTACACAACACCAGTCTAGGAAACATAAAGATATCCCAGAAGAAGATATGCATAAATGTGATCtatgtgattataaaacgaaatataagaCCAGCCTTACACAACACCAGTCAAGGAAACATATAGATATCGCCGAAGAAGATATGTATAAATGTACttcgtgtgattataaaaccatttataagaGCCATCTCACACAGCATCAGTTAAAACATAAAGACATTCACAAAGTGCAGATGCAtcaatgtgatttgtgtgatttcAAAACGAAATACAAGACCAATCTTACAAAACACCAGTTAATGAAACATAAAGATATCTCTGAAGAAGATATGTATAAATGCCACTCGTGTGACTTTAAAACTGTGTATAAGTGCTACCTTACAATGCATCAGCAAAAACATCAGAACTTATTACGTAAGGATGTATCTGCGACCAGACTCATAAAAGCCATATCAGCGACTATAAAGGAATATTTCAAACACCAGTTAAGAAACATACCCAAAGGTCATATATATAAATGTGATACACGTGATTATAAAACACATTATAAGGACAGTTTTACACTGCATATACAAAAGAAAAGTAGACGTATATGTGTGCCTTCTGTGGTTAGAAGAAAACTTGTGAAAATGTCGCCTTAA
Protein Sequence: MKEELEDVDYGKGLERLSNIKQENVEIKSEENYSGTCVQNLKDEPVDCTGTSLLRNCFNVKEEIKDICDDSAIESLSNIKCEDIEIKSEEDYIDIPLQNVKDEPVDCRDECLPEYVETTNNSAVKHKRNRYNPRDKKSTLKHIVTFEKELFKCNSCEYKTYLRKSFTRHQYKHKDVPEELMYHCDSCDYKTNYKAYLTQHRSRKHKDIAEEDMHKCDSCGFKTKYKASLMQHQLIKHKGIPEEDMHKCDLCDYKTKYKSCLKQHQLIKHKDIPEEGMHKCDLCDYKTKYNASLKQHQLIKHKDISEEDIHKCDLCDYKTKYKTNFTQHQFRKHKDIAEEDMHKCDSCGFKTKYKSCLMQHQLVKHKDISEEDMHKCNSCEFKTKYKTCLTKHMSRKHIDIPEEDMYKCDSCDYKTFYKKILTRHQLKHIPKVQMYPCDLCDFKSKYKNNLTTHQLMKHTDMSEEDMHKCDSCDYKTKYKSTLMQHQLLQHTNIPEEDMHRCDLCDYKTKYKSGLTAHKSRKHIEMAEEDMYKCALCDYKTTFKNDLTQHQLKHKDIHKVKMYRCDLCDFKTKYQSNRSKHQLMQHKYISEEDMYKCDSCGYKTKCNVMDTDVGSFVTYKNFLNDRFDLKGEVEDVDYGKGMESLLDIKEENFDIKSEENYGGTRLQNLKEEPVECTGTSLLTNCFNVKEDIKDICDDSTIEGLSNIKCEDIEIKSEEDYIDTPLQNLKYEPVDSTDECQPEYVETTNNSAVKHERNRYYPRDKYGTLKHRVFEKEMYKCNSCNYGTDRKRNFTRHQYRHKNVPEELMYHCDLCDYKTIYKGYLTQHQSRKHKDIPEEDMHKCDLCDYKTKYKTSLTQHQSRKHIDIAEEDMYKCTSCDYKTIYKSHLTQHQLKHKDIHKVQMHQCDLCDFKTKYKTNLTKHQLMKHKDISEEDMYKCHSCDFKTVYKCYLTMHQQKHQNLLRKDVSATRLIKAISATIKEYFKHQLRNIPKGHIYKCDTRDYKTHYKDSFTLHIQKKSRRICVPSVVRRKLVKMSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -