Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:39449071-39452781[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0013 0.098 14.6 2.4 1 23 305 327 305 327 0.98

2 10 0.00065 0.047 15.6 0.2 1 23 336 358 336 358 0.98

3 10 0.01 0.73 11.9 2.0 1 23 367 389 367 389 0.98

4 10 0.00068 0.049 15.5 3.1 1 23 398 420 398 420 0.98

5 10 0.0012 0.085 14.8 3.1 1 23 429 451 429 451 0.98

6 10 0.005 0.36 12.8 2.1 1 23 460 482 460 482 0.98

7 10 0.00087 0.063 15.2 2.2 1 23 491 513 491 513 0.98

8 10 0.0068 0.5 12.4 3.9 1 23 522 544 522 544 0.98

9 10 0.00012 0.009 17.9 1.2 1 23 553 575 553 575 0.99

10 10 0.0046 0.33 12.9 4.4 1 23 584 606 584 606 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0013	0.098	14.6	2.4	1	23	305	327	305	327	0.98
2	10	0.00065	0.047	15.6	0.2	1	23	336	358	336	358	0.98
3	10	0.01	0.73	11.9	2.0	1	23	367	389	367	389	0.98
4	10	0.00068	0.049	15.5	3.1	1	23	398	420	398	420	0.98
5	10	0.0012	0.085	14.8	3.1	1	23	429	451	429	451	0.98
6	10	0.005	0.36	12.8	2.1	1	23	460	482	460	482	0.98
7	10	0.00087	0.063	15.2	2.2	1	23	491	513	491	513	0.98
8	10	0.0068	0.5	12.4	3.9	1	23	522	544	522	544	0.98
9	10	0.00012	0.009	17.9	1.2	1	23	553	575	553	575	0.99
10	10	0.0046	0.33	12.9	4.4	1	23	584	606	584	606	0.98

Sequence Information

Coding Sequence: ATGGAggttttagaaattattttgcccacattgAACTTGGAAGAGGGATGTAAAAACCTCATGTGTAAATTATGCTGCTCCAAATTATTTgctgcttttaattttaaatcggCCTGTATGGATACTGAGGAAATTATTTCTCGTCATATTAATGCCCGTAATGTGCCAGTGATCGACTTGAAAGAAGTTTACGTAACGTTGAATGAAAATATTCAGTTAACTGATATATTAGAAAGtcagaaaatttgttgtttgtgTCTTCAACTGGTAACATACGGATTCAATTCGCTAAATGAGGGCGACAATGACGTAATCGGTACATATTTGCCTCGTATAAACATCAGTGCTACCAAAAACGCTGTCATATGCGAAGCATGTTTTAATTCCCTTAATATCCACGACGGATTTGTAAAGAGTTGCCTTGAAGTgcagaaaatatacaaatatgccGATAAACAGTCTGTTATTAAAACTGAAGAGATTGAAATTAAACTGGAAGATAATGGTCAGGATGTGCAAGACCAATATACTAACATAGATGTACCatcttatattaaatttgaaaagatGGAGATGAAACTTGAAGATGCTCAAGATGTGCAGAAGGAATATAAAAACAGTGATaagcaaaattatattaaactggAAGAAATTGAGATAAAGTCAGAGGAAGGAGATCAAGATAAtGATTCCTCATACAATGTGGATGAATCAACAATTGACAACAAAAAGAagcatatttttaaagataatgGAGAAAGAAAAGATAAATATATGGTTGAACGTAAGATCAAAgttcatttaaacaaatgcgAAATTCCATCATCTGTATCATCATATAAGAATAAATATGAAGCTTCTTTGAAACACAAAAGCTTTACAAAACGGAAGCATTCTTCGGAAATTCAAATCTTCAGGTGCGATTTATGTACTTACGAATCTATACATAAGGGTAATCTGAAAAGTCATcaattaacacacaaagacCTTTCTGAAATCCAAACGTACAAATGTGATGCATGTGATTACGTAGCTAAACGTAAGGGTGATCTAAAAAGTCATCTATTAATACACAAAGACCCTTCcaaaatccaaatgtacaggtGTGATGCATGTGATTATGAAACTATACATAAGCGTTATCTGAAAAGTCATCAATTAATACACAAAGACCattctgaaatccaaatgtacaagtgtgatactTGTACTTATGAAACTAAACGCAAGGAGAAGCTGAAAAGACATCAGTTGTTGCACAAAAACCCTTCTGAAATACGAATCTACAAATGTAACGATTGTAATTATCAAAGTAGATTTAAGAAATATCTGAACAATCACCAATTAATACACAAAGACTCTTCTGAAATCCCAGCGTACAGGTGTGATGCATGTGATTATCAAACTAGAGGTAAGCATAATCTGAAAAGTCATCAATTAATACACAAAGACTATACTGAAAcccaaatgtacaagtgtgatactTGTACTTATGAAACTAAACGCAAGGATATGCTGAAAAGTCATCAGTTGTTGCAtaaagacccttctgaaattCAAATCTACAAATGTAACAAATGTAATTATCAAAGTAGATTTAAGAGATATCTGAAAGATCATCAATTAATACACAAAGAtccttctgaaatccaaatgtacaggtGTGACGCATGTGATTATGTAACTAAACGTAAAAATGATCTAAAGTCTCATCAGTTAACACACAGAGACCGTTCTGAAATACAAATGTACAGATGTGATGCATGTCATTATAAAACTATACGTAAGACTAATCTGAAAAGTCATCAATTAAAACACAAAACTATACGTAAGACTAATCTGAAAAGTCATCACTTAATACACAAAGAGCATTCTGAAAcccaaatgtacaagtgtgatactTGTACTTATGAAACTAAATGCACGGATAAGCTGAAAAGACATTAG
Protein Sequence: MEVLEIILPTLNLEEGCKNLMCKLCCSKLFAAFNFKSACMDTEEIISRHINARNVPVIDLKEVYVTLNENIQLTDILESQKICCLCLQLVTYGFNSLNEGDNDVIGTYLPRINISATKNAVICEACFNSLNIHDGFVKSCLEVQKIYKYADKQSVIKTEEIEIKLEDNGQDVQDQYTNIDVPSYIKFEKMEMKLEDAQDVQKEYKNSDKQNYIKLEEIEIKSEEGDQDNDSSYNVDESTIDNKKKHIFKDNGERKDKYMVERKIKVHLNKCEIPSSVSSYKNKYEASLKHKSFTKRKHSSEIQIFRCDLCTYESIHKGNLKSHQLTHKDLSEIQTYKCDACDYVAKRKGDLKSHLLIHKDPSKIQMYRCDACDYETIHKRYLKSHQLIHKDHSEIQMYKCDTCTYETKRKEKLKRHQLLHKNPSEIRIYKCNDCNYQSRFKKYLNNHQLIHKDSSEIPAYRCDACDYQTRGKHNLKSHQLIHKDYTETQMYKCDTCTYETKRKDMLKSHQLLHKDPSEIQIYKCNKCNYQSRFKRYLKDHQLIHKDPSEIQMYRCDACDYVTKRKNDLKSHQLTHRDRSEIQMYRCDACHYKTIRKTNLKSHQLKHKTIRKTNLKSHHLIHKEHSETQMYKCDTCTYETKCTDKLKRH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -