Malt042746.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:43085168-43089331[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0012 0.084 14.8 3.0 1 23 85 107 85 107 0.98
2 17 0.5 36 6.5 0.4 1 23 115 137 115 137 0.97
3 17 0.0022 0.16 13.9 5.3 1 23 146 168 146 168 0.98
4 17 0.12 8.9 8.5 2.8 1 23 177 199 177 199 0.98
5 17 5.1 3.7e+02 3.4 5.3 1 23 208 230 208 230 0.98
6 17 0.0056 0.41 12.7 2.3 1 23 234 256 234 256 0.98
7 17 0.19 14 7.9 7.1 2 23 263 284 262 284 0.95
8 17 0.029 2.1 10.4 1.3 2 23 294 315 293 315 0.96
9 17 0.00038 0.028 16.3 1.6 1 23 512 534 512 534 0.98
10 17 0.26 18 7.5 6.2 1 23 543 566 543 566 0.96
11 17 0.74 54 6.0 4.6 1 23 575 597 575 597 0.97
12 17 0.18 13 8.0 4.9 1 23 606 628 606 628 0.99
13 17 0.96 69 5.6 2.1 1 23 637 659 637 659 0.98
14 17 0.0025 0.18 13.8 3.2 1 23 668 690 668 690 0.99
15 17 0.0015 0.11 14.5 1.1 1 23 699 721 699 721 0.98
16 17 0.0019 0.13 14.2 4.1 1 23 730 752 730 752 0.98
17 17 0.029 2.1 10.4 5.0 1 23 761 783 761 783 0.98

Sequence Information

Coding Sequence
ATGATATTTGTGGACGACATCGAAGCAAGTATGTGCGGTATTAAGTATGAGGATGTTGAAATCAAATCCGAGGAGAATTATAGTGACATTACCCCACAGAACTTGAAAGATGAACCAATCGACTGCACAACTGAATGCCAATCCGAATATGTAGAAACGACTAATCATTCTATGGTTAAGAGCAAAAGAGAACGACGTGGGTCAAAAACCGAATACCATGATTTAGAACACAGGGATTCCTCTGAGGagatgtttaaatgcaattcctGCGATTACAAGACCGATCGAAAGAAAAGTCTTGCAAAACATCAACTAAGACACACACACAGCCTTGAAGACATATATATTTGCGATTCGTGTAGTTATAAAACAGCGAATAGGGCTGTTTTTAAAGAACATCAGATAAGCCACAAGAATAACCCGGAGGAGcagatgtttaaatgtgatatatgtgattataaaacctGTTTTAGGAAAGCTCTTAAACGACATCAGTTAAAGCACAAAATTTCTTCTAGAGAGCAGATGTACAAATGCGATTCCTGCGTCTATGAAACGGGTGTAAAGAGCAGTCTTACGAAACATCAACATAAACACAGAGACATCCGTGAAATCCAGGTATATAAATGTGATTCGTGCAAATATAAAACGGgtaagaaaaagaaatttacCCTGCATAAGCTTAAACACGCGCAGGTTTTTAAATGTGACTCGTGCGATTATGAAATCGATAATAAGAGCAAGTTTACACGACATCAATTAAAACACGAGGAGAAGCAGCTGCTTGAATGTGATCACTGCCATTACAAAACCCGTCATAGGGGCTATCTCGAAAAACATAAGGTAAAACACGAAAACAATCGCAAGGAACAGCTGCTTAGATGCAATATGTGTCCTTATAAAACCTGCGATATGATCAGCTTACTGCGACATCAGCTAATACACAAATACATCTTAAATGAGCAGATGTTTGAATGTGATTCATGTAATTATAAGACGATtgaCAGTTCCTTCCATAACATGAAAGATGAATCTGTTGATCACCATAATGAATGCACCCCTACGAGTGTCTCGATGAGCTGTTTGAATGTgaatgaaaaagttaaaaatattggtAACGACAACGACATAGAAAGGAAGCTCAATATTAAATCCGAAGATGTTGAAATGAAACGTGAAGAtgatAGTCTCTTCCCCAACATGAAAGATGAACCTGTTGATGACACGAGTGAGTGCACCTCTACGAGTATCTTATCGAACTGTGTGAATGTGAAGGAAGAAATTAACAATGTTTGTGACGGCAACACTGAAACAAGTCCGTGCGGTATTAAATGTGAATATGTTGAAATCAAATCCGAGGAGAATTATAGtgACACTTCCTCACGAAACTTGAAAGATGAAAGTGTTGACTGCATGAGTGAATGCCAATCTGATGTGAAAACGACGAATGATTCTATGAAGTGCGAGAGAAAACGACATGGGCCAAAGAACAAACACCGTGACTTAAAAGACACGGATTCAGTTGAGGAGACGTATAATTGCAATTCTTGTGATTATTCATCCGACCAAAAGAGAAACCTTATAAGACATCAGCTGAGGCACAAAAACATCGTCGAAGAGGagatgtataaatgtgattcaTGCAGTTATAAAACGGTGTACAAGACTAATTTTAAAAGACATCACCAGCTGAGACATCAAAGTGTTCCGGAGGAGcagatgtttaaatgtgatCTATGCgactataaaactatttataagtCCTGCTTTGTAGGACATCAGTTTAAACACAGAGACATACCCGACGAACAGATGTTCAAATGCGAGGCGTGCGATTACAAAACCGGTTTTAGGCACACTTTCAAACGACACCAGTTAACGCACAAAGTTTTTTCTAAAGAGcagatgtacaaatgtgattCATGCGTCTATGAAACGGGTGTAAAGAGAAATTTCGCGCATCATCAACTCAGACACAAAGACGTCCATGAAAACAAGGTATATAAATGTGATTTGTGCgattataaatcaatttataaaaataattttacgcaACATCAGCAACGGCACGCGAACTTCTCCGAGGAGCAGATGTTTAAGTGTGATTTATGTGACTATAAAACCGTTATTAAAAGCAATTTTCTAAGACATCAGTTAATACATAAGGACGCCTCCGAGAAGCGGATGTTTAAATGCGATCACTGTGATTATAAAGCCATTTATAAGAGTTATCTTTCCCGGCATCAGCTAAAACACAAAAACAGTCCCGAAGGACAGATGTTTAGATGTGAATCGTGCACTTATGAGACAGTGCATAAATCTTCTTTTACGAAACATCAGCTGAAGCACAAACGTAGCCTTGGGGAACAGAATGTTAAATAA
Protein Sequence
MIFVDDIEASMCGIKYEDVEIKSEENYSDITPQNLKDEPIDCTTECQSEYVETTNHSMVKSKRERRGSKTEYHDLEHRDSSEEMFKCNSCDYKTDRKKSLAKHQLRHTHSLEDIYICDSCSYKTANRAVFKEHQISHKNNPEEQMFKCDICDYKTCFRKALKRHQLKHKISSREQMYKCDSCVYETGVKSSLTKHQHKHRDIREIQVYKCDSCKYKTGKKKKFTLHKLKHAQVFKCDSCDYEIDNKSKFTRHQLKHEEKQLLECDHCHYKTRHRGYLEKHKVKHENNRKEQLLRCNMCPYKTCDMISLLRHQLIHKYILNEQMFECDSCNYKTIDSSFHNMKDESVDHHNECTPTSVSMSCLNVNEKVKNIGNDNDIERKLNIKSEDVEMKREDDSLFPNMKDEPVDDTSECTSTSILSNCVNVKEEINNVCDGNTETSPCGIKCEYVEIKSEENYSDTSSRNLKDESVDCMSECQSDVKTTNDSMKCERKRHGPKNKHRDLKDTDSVEETYNCNSCDYSSDQKRNLIRHQLRHKNIVEEEMYKCDSCSYKTVYKTNFKRHHQLRHQSVPEEQMFKCDLCDYKTIYKSCFVGHQFKHRDIPDEQMFKCEACDYKTGFRHTFKRHQLTHKVFSKEQMYKCDSCVYETGVKRNFAHHQLRHKDVHENKVYKCDLCDYKSIYKNNFTQHQQRHANFSEEQMFKCDLCDYKTVIKSNFLRHQLIHKDASEKRMFKCDHCDYKAIYKSYLSRHQLKHKNSPEGQMFRCESCTYETVHKSSFTKHQLKHKRSLGEQNVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-