Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:43689697-43691695[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0011 0.082 14.8 4.1 1 23 282 304 282 304 0.99

2 9 9.9e-05 0.0072 18.2 2.7 1 23 313 335 313 335 0.99

3 9 0.0046 0.34 12.9 1.3 1 23 344 366 344 366 0.98

4 9 0.031 2.3 10.3 2.4 1 23 374 396 374 396 0.96

5 9 0.001 0.072 15.0 3.0 1 23 405 427 405 427 0.98

6 9 0.0015 0.11 14.5 4.8 1 23 436 458 436 458 0.98

7 9 0.055 4 9.6 2.5 1 20 467 486 467 489 0.94

8 9 0.0018 0.13 14.2 2.7 1 23 498 520 498 520 0.99

9 9 0.0024 0.18 13.8 0.6 1 23 529 551 529 551 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0011	0.082	14.8	4.1	1	23	282	304	282	304	0.99
2	9	9.9e-05	0.0072	18.2	2.7	1	23	313	335	313	335	0.99
3	9	0.0046	0.34	12.9	1.3	1	23	344	366	344	366	0.98
4	9	0.031	2.3	10.3	2.4	1	23	374	396	374	396	0.96
5	9	0.001	0.072	15.0	3.0	1	23	405	427	405	427	0.98
6	9	0.0015	0.11	14.5	4.8	1	23	436	458	436	458	0.98
7	9	0.055	4	9.6	2.5	1	20	467	486	467	489	0.94
8	9	0.0018	0.13	14.2	2.7	1	23	498	520	498	520	0.99
9	9	0.0024	0.18	13.8	0.6	1	23	529	551	529	551	0.98

Sequence Information

Coding Sequence: atggaAAAGTATGAAAAGCCTTTCTGCAAACTTTGCCTAGGTGTTATATATGATAGAAATTTCAAGGCAATAGAAGAAATAATAGGAGAGGTTTTAGACATTCTTCTGCTGAAGCTGAGTGCACAACAAAGGAATGTACTTGCAAAGTGCGAGGCCTGCTCCACGAAATTATTTGCGGCCTTTAATTTCAAGGCGACGTGTATGAACACCGAAGACAGTATTTTTCCTTACGTTAATTCTGGAAGAAGGACACCGATTGACTTGAGAGAAGTTTATCTAAAGGAAAGAGGGAAAGAACAtttaaaagatgttttagatGATGAGAGGATTTGTCGTTTGTGTATGCAAATCGTCACCTGCGACTTTACACCAGTTGAAGAAGTTGATGTCGGTGTGCTTAGTAAATTCATTCCGGAAGTTAACTTCAGTTCCACCAGAGAAAACGTTATATGCAAAATTTGTGTCGATTCGCTGGATATCCATACCGGTTTCTTAAATAACATACATGCGAAGGaagtaattaaagatatttgtaACGATCCCGCAGAAAGTCTGTCCAATATTAAATGCGAGGAAGTTGAAATTAAATCCGAAGATAATGATAGTGACAACCCCTTACCGACCTCAAAGGATGAACTTGGAGAATACGCAAGCGAGTGCAGATCCAAATatgtagaaaagaaaaataattctacacTTAAACACAAAAAGAAGGAACAGGGGTCGGAAAGCAAATACAACGGTTTAAAACGTAACAAAAAGAAACGATCCGGTTCCAAAACCAAGCAGAAGAGATGTGTTGACAACCATCAGCTAACCCACAAAGATATCTCTGAGCATATATATAAGTGTGATATGTGTGACTATAAAAGCAAGCACAAGGGAAATTTTGACAACCATCAGCTAACCCACAAAGATATCTCTGAGGTGCAGCGATACAAGTGTGATATGTGTAATTATGAAACTAAGCGGAAAAGAAATCTTAAAGATCATCTGCTAAAGCACAAAACCATCCCTGAGGAACAGATGTTCAagtgtgatttgtgtgattataaaagcAAACGGGAGATATATCTTGCAAACCACCGGCTAAGGCACGACATCCCTGAGGAGCAGATGTATAAGTGTGATTTGTGTGACTATAAAACCTTTTATAAGaaacttttcaaaatacatCAGGTCATACACAAAGACGTACCCGAGGAGCAGATGTTTAAGTGTTATTCATGTGATTATAAAGCTAAGCAGAAGGTAAACCTTAAAAGGCATCAGCTAAGGCACAAATACATACCTGAAGACCAAATGTTTAAGTGTGAactgtgtgattataaaactagGCGAAAGATATGTCTTACAAAGCATCAGCTAATGCACAAAGACATATCCAAGAGGCAGATATATCAGTGCGATTCGTGTGATTTTAAGACCGTTTATAAGaccaattttacaaaacatcaGTGGATGCACAAAGACATCCCAGAGGAGATGATGTTTAAATGTGATTCATGCAATTATAAAACCATCTTTAAGAATAATTTGATGAAACATCAGATAACTCATCAAAACATACCTGAGGATCAAATGTATAAGTGTGGATTATGCAGTTATAAAGCTGTTCGAAAGTCCTATCTTGCTATACAtcaattaaaacacaaaaacaCTACCAAAGATGAGCATTGCACGTAA
Protein Sequence: MEKYEKPFCKLCLGVIYDRNFKAIEEIIGEVLDILLLKLSAQQRNVLAKCEACSTKLFAAFNFKATCMNTEDSIFPYVNSGRRTPIDLREVYLKERGKEHLKDVLDDERICRLCMQIVTCDFTPVEEVDVGVLSKFIPEVNFSSTRENVICKICVDSLDIHTGFLNNIHAKEVIKDICNDPAESLSNIKCEEVEIKSEDNDSDNPLPTSKDELGEYASECRSKYVEKKNNSTLKHKKKEQGSESKYNGLKRNKKKRSGSKTKQKRCVDNHQLTHKDISEHIYKCDMCDYKSKHKGNFDNHQLTHKDISEVQRYKCDMCNYETKRKRNLKDHLLKHKTIPEEQMFKCDLCDYKSKREIYLANHRLRHDIPEEQMYKCDLCDYKTFYKKLFKIHQVIHKDVPEEQMFKCYSCDYKAKQKVNLKRHQLRHKYIPEDQMFKCELCDYKTRRKICLTKHQLMHKDISKRQIYQCDSCDFKTVYKTNFTKHQWMHKDIPEEMMFKCDSCNYKTIFKNNLMKHQITHQNIPEDQMYKCGLCSYKAVRKSYLAIHQLKHKNTTKDEHCT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -