Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:37765786-37768512[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.039 2.8 10.0 0.7 1 23 241 263 241 263 0.98

2 12 0.0042 0.3 13.1 2.6 1 23 272 294 272 294 0.98

3 12 0.0016 0.11 14.4 3.4 2 23 307 328 307 328 0.98

4 12 0.037 2.7 10.1 2.2 1 23 337 359 337 359 0.99

5 12 0.011 0.81 11.7 3.6 1 23 368 390 368 390 0.99

6 12 0.0004 0.029 16.3 4.4 1 23 425 447 425 447 0.99

7 12 0.011 0.76 11.8 0.8 1 23 456 479 456 479 0.97

8 12 0.003 0.22 13.5 3.6 1 23 488 510 488 510 0.97

9 12 0.04 2.9 10.0 3.7 1 23 519 541 519 541 0.98

10 12 0.023 1.7 10.7 3.7 1 23 550 572 550 572 0.98

11 12 0.0011 0.082 14.9 1.3 1 23 581 603 581 603 0.99

12 12 0.0012 0.09 14.7 2.7 1 23 612 634 612 634 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.039	2.8	10.0	0.7	1	23	241	263	241	263	0.98
2	12	0.0042	0.3	13.1	2.6	1	23	272	294	272	294	0.98
3	12	0.0016	0.11	14.4	3.4	2	23	307	328	307	328	0.98
4	12	0.037	2.7	10.1	2.2	1	23	337	359	337	359	0.99
5	12	0.011	0.81	11.7	3.6	1	23	368	390	368	390	0.99
6	12	0.0004	0.029	16.3	4.4	1	23	425	447	425	447	0.99
7	12	0.011	0.76	11.8	0.8	1	23	456	479	456	479	0.97
8	12	0.003	0.22	13.5	3.6	1	23	488	510	488	510	0.97
9	12	0.04	2.9	10.0	3.7	1	23	519	541	519	541	0.98
10	12	0.023	1.7	10.7	3.7	1	23	550	572	550	572	0.98
11	12	0.0011	0.082	14.9	1.3	1	23	581	603	581	603	0.99
12	12	0.0012	0.09	14.7	2.7	1	23	612	634	612	634	0.99

Sequence Information

Coding Sequence: atggataattttgGAGAACAGTGTTGTAGCTTATGCCTCGGAGTATCAAGAGATAAACATTTTGAAGAGATAAAAGACTCCACCAGAAGTATTTTAGACGGTCTTTTACTGCAACTGaaGTTTGACGACAGAAACAAACATATCTGTAACGTTTGTGCCCTAAATGTAATGGAGGCGTTCAAATTTAAGTCAATGTTATGCATGGAAGTGGCCACCAATGAATTTATGTCCGTACACGAAGTAGAGATTGATGTGATTGAGAAATATATTCCAGAAATTAATTTCAGTGTCGTCGAAAATCCTGTTATTTGCAAACGATGTTTTGATTCTTTGGGTACTTACGGTAGTTTCATAAGGAAATGTTTAGAAATagaagagaaaattaagaatgttCGTAGCACAGAAGCCCCTGGTGGTGTGGACTGGATCCAATCCTTACCTGCTTCCGTTAAAACAGAAAAGATGGAAATAAAATCTGAAGTAAATGAACATGAATATGAATTTGTCGGAACTAAACCTACTGCAGTGAAATATGAAGGTGAAGAGATGTTCATTAAAACGGAAtccattgaaatattaaaagaaagtaATGAAGACGGTTTAGAAAATAGtaCTCTGGATATTTCACCCCAGGAACTGGAAGGCAAGGAGTTTTCTGAAACGAACAAGGAGAAAATGTATACAAATGAAATTGATTCTGATAACTTGACACCCAAAATATACGTGTGTGACACATGTAAATTCAAAACCACAAACAGGAAAGCTTTTATAGGCCACCAAATAGTACATAAGGACCCCTCAGCTGTGCGAATATACAAATGTGATCTGTGTGATTTTGAATCTAAATATAATGGGTCTTTTAGGCGCCACCAATCGAAACACGCTAATGGCACTATTGTCACAAAAGTGTCGATACGGAAGTGTGATCTCTGtgattataaaacgaaatataagaACAAACTTAAACGCCACCAGTTAACACACGCAGATCCTTCCGACGTACCCATGTACAAGTGTGATCTATgtgattttaaatcaaaatataaggAAAGCATCAGGCTTCATCAATTGAAACACGCTGACCCTTCAAAAGTTCAAATGTACACGTGTGATGTATGCAGTTTTAAAACCAAATATAAGGATAGCTTTAAGCTTCACCAAATGAAACACGTAGATCCGTTAAAAGCACGACAGTACAAGTGTGATTTGAAAGTTACGGACAATCTGAAATCTCGCCAAATGGCAAATGCAGATTCCTTACAAGCACGTGTATACAAATGCAGCGAATGTAATTTTAAGTTCAAATATGAAGTATCTTTTAAACGCCACCAGTTGAAACATGCTAATCCTCCACAAGTACGAACATACAAATGTGAGTTGTGTGATTTTGTGACCAAATATGGGAGCGGTTTCCGAGCTCATCAGCTGAAACAGCATGCAGATCCTTCGGAGGTAGAAATGCACAAATGTGATGTGTGTGActttaaaacgaaatataaaaataatctcAAATCCCACCAGTTGGCACATGCAAATCCTTCAAAGCAGCAGTTCTTCAGATGTAACTTGTGTGACTTTGTTACTAAACGTcagaataattttaactttcacCAGATGAAACACACAAATCCCTCGAAAATAGAAATTCACAAGTGCGATTTATGCGATTTTGTAGCCAAACGTAAGTTCGATCTTAAATATCACAGGTTGAAACATACAGAGCGTTCAGTAGAGCAAAAGTacaaatgtgatttgtgtgacTATGTGACTCAGTACAAGAGCGGCCTTCAGTACCACCAGTTGAAACATGCAGATCCCTCGGAAGTACTAATGTACAAGTGTAATCTGTGTGATTTTCAAAGTAAATATAACAGCAGCCTTAAGTCGCACCTATTGAAACATGAGGAATCTATTTGA
Protein Sequence: MDNFGEQCCSLCLGVSRDKHFEEIKDSTRSILDGLLLQLKFDDRNKHICNVCALNVMEAFKFKSMLCMEVATNEFMSVHEVEIDVIEKYIPEINFSVVENPVICKRCFDSLGTYGSFIRKCLEIEEKIKNVRSTEAPGGVDWIQSLPASVKTEKMEIKSEVNEHEYEFVGTKPTAVKYEGEEMFIKTESIEILKESNEDGLENSTLDISPQELEGKEFSETNKEKMYTNEIDSDNLTPKIYVCDTCKFKTTNRKAFIGHQIVHKDPSAVRIYKCDLCDFESKYNGSFRRHQSKHANGTIVTKVSIRKCDLCDYKTKYKNKLKRHQLTHADPSDVPMYKCDLCDFKSKYKESIRLHQLKHADPSKVQMYTCDVCSFKTKYKDSFKLHQMKHVDPLKARQYKCDLKVTDNLKSRQMANADSLQARVYKCSECNFKFKYEVSFKRHQLKHANPPQVRTYKCELCDFVTKYGSGFRAHQLKQHADPSEVEMHKCDVCDFKTKYKNNLKSHQLAHANPSKQQFFRCNLCDFVTKRQNNFNFHQMKHTNPSKIEIHKCDLCDFVAKRKFDLKYHRLKHTERSVEQKYKCDLCDYVTQYKSGLQYHQLKHADPSEVLMYKCNLCDFQSKYNSSLKSHLLKHEESI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -