Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:39158940-39163352[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00025 0.018 16.9 1.3 1 23 295 317 295 317 0.99

2 14 0.2 15 7.8 6.1 1 23 326 348 326 348 0.98

3 14 0.0047 0.34 12.9 1.4 1 23 357 379 357 379 0.98

4 14 0.0087 0.63 12.1 1.4 1 23 388 410 388 410 0.98

5 14 1.8 1.3e+02 4.8 3.7 1 23 419 441 419 441 0.97

6 14 0.063 4.6 9.4 4.9 1 23 450 472 450 472 0.98

7 14 0.00074 0.053 15.4 1.9 1 23 481 503 481 503 0.98

8 14 0.0017 0.13 14.3 2.3 1 23 512 534 512 534 0.99

9 14 0.0061 0.44 12.6 1.3 1 23 543 565 543 565 0.99

10 14 0.0066 0.48 12.4 1.5 1 23 574 596 574 596 0.98

11 14 0.0023 0.16 13.9 2.4 1 23 605 627 605 627 0.98

12 14 0.0071 0.51 12.3 1.7 1 23 634 656 634 656 0.97

13 14 0.36 26 7.0 1.9 1 23 665 687 665 687 0.97

14 14 0.21 15 7.7 5.7 1 23 696 718 696 718 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00025	0.018	16.9	1.3	1	23	295	317	295	317	0.99
2	14	0.2	15	7.8	6.1	1	23	326	348	326	348	0.98
3	14	0.0047	0.34	12.9	1.4	1	23	357	379	357	379	0.98
4	14	0.0087	0.63	12.1	1.4	1	23	388	410	388	410	0.98
5	14	1.8	1.3e+02	4.8	3.7	1	23	419	441	419	441	0.97
6	14	0.063	4.6	9.4	4.9	1	23	450	472	450	472	0.98
7	14	0.00074	0.053	15.4	1.9	1	23	481	503	481	503	0.98
8	14	0.0017	0.13	14.3	2.3	1	23	512	534	512	534	0.99
9	14	0.0061	0.44	12.6	1.3	1	23	543	565	543	565	0.99
10	14	0.0066	0.48	12.4	1.5	1	23	574	596	574	596	0.98
11	14	0.0023	0.16	13.9	2.4	1	23	605	627	605	627	0.98
12	14	0.0071	0.51	12.3	1.7	1	23	634	656	634	656	0.97
13	14	0.36	26	7.0	1.9	1	23	665	687	665	687	0.97
14	14	0.21	15	7.7	5.7	1	23	696	718	696	718	0.98

Sequence Information

Coding Sequence: ATGCAACCAGAAAATCTTAATAAATCAGCACTTTGCGGACTGTGTCTTAATATCATAAGTTATCCAAATTCCCAAGTAATAGAAGAAGTTGCAACAGAGgttttagaaattgttttgcCAAATCTAaACTTGGAAATGAGGAATGAATATCGAGTGTGTAAAGCATGCTGGTCAAAATTATTTGCCGCGTATAATTTTAAGGCGACATGTATGGATACTgaggatattattttttctcataTCAGTACCGATACAGAGTCAACGATTGAATTAAAGGAAGTCTATATAAAGGTTAATGGAGATATTAAATTAACCGATACATGGGAAAATCATAGGATTTGCCGATTATGCCTTCAACTGGTAACATACGGATTTGTGTCACTTGATGAAGTGGATAGTGATATAATTGATACATATATACCTCAAATAaacATCCATGCTACCAACAACCCTGTTGTTTGTGTATCGTGTTTTAATTCGCTTGGAACACATGGCAGTTTTTTAAGGAGCTGCCTTAAAAAACATGAGAAATGCAAAAGTGCCGATAGCAAGCCTTTTATTAAAAGTGAATTAGAACtggaagaaaatattgaaaaccaGTTTTATATCAAATCTGGGGAGATTGAAATAAAGACGGAGGATGAAGAAGATCAAGATAAtgATACCTCTTCATACAAATcagatgaaaaaataattgagaaGCATATTTCTCAAGATATAGCAGAACCAAAGCATGAAGTAAAATGTGAGATCGAAGATCAAATAAACAAATGCAAAACTCCGTTAAATGTATCATATAAAAATGGACATAAAAGAGAGCCTGAAGATTGTTTAAACCATAATATTGCCCAAAAACGGAAGTCTTCTACCGAAATCCAAATCTACAAGTGTGACTTATGCGATTACAAAAGTAAACATGAAGATGAGCTGGAAGTTCATCAGTTAACACACGAAAACCCTTCTAAAACGAAAATGTacaaatgtaatatttgtacatttgaaactaaatataagcACTGTTTGAAAGGACATCAACTGatacacaaagacccttctgaaatccaaatgtacaggtGTGATTCATGCGACTTTCAAACTAAATACAAGGGTGCTCTGAAAACTCATCAGTTAATGCACAAACACCCTTGTGAAAttgaaatgtacaaatgtgatctTTGTACTTACGAAGCAAAACATAAGAGGTGGTTGATAAATCATCAATTAGTACACAAGGACCCTTCTGAACTGCAAATGTTCAAGTGTgatgtttgtaattttgaaacGAAATGCAAGAGTAGGCTGAGAATTCATCAATTATTGCATAAAGACTCGACTGgaatccaaatgtacaaatgtgaattttgtactTATGAAACTAGATATAAACAACACCTTAAAAGTCATGAGTTATCACACAAAGACTCCTCTGAAATCCAAATATacaaatgtaatatttgtacttatgaaactaaatataaaaattctttgaaaaGTCATCAAATAATACACAAAGATGcatctgaaatccaaatgtacaaatgtgatcgGTGTGATTATGAAGCTAAAAGCAAGAGTAGGCTTACAAAACATCGGTTAACACACAAAGACCCGTCTGAAATCCAAGTGTACAAgtgcaatttttgtttttacgaaGCTAAATATAAAAGCGCGTTGATAAATCATCAATTAATGCACAAAGATCCGTCTCAAAttcaaatgtacaagtgtgatgcATGTACTTACGAAACTAAATATAAGAGTGGCCTGAAATCTCATCAGTTATCACACAAAAACAGTTCcaaaatccaaatgtacaaatgtgaacTTTGTACTTATGAAACTAAACGGAAGCAAAGTTTAAAATATCATCAATTAATACACAAATCTGAAATCGAAATGTACAAATGCGATGCATGTAATTTTGAAACCAAACGCAAGGATAAGCTGAAAACGCATCAGATACTGCACAAAAACCCTTCTGAAATTCAAATGTACAGGTGTGATTCATGCGTCtttgaaactaaatataaggGTTATCTGAAAACTCATCGTTTATTACACAAAGACCCTTGCGAAatacaaatgtacaaatgtgaattTTGTACGTATGAATCTAAACGGAAGCAGTGTTTAAGAAATCATGAATTAAAACACAAATCTGAAATTGAAATGTACAATTGTGATGCAGGCAATTTTGAAACTAATCGCAAGGATAAGCTGAAAACTCATCAGTTAGGACACAAAGACCCacctgaaatccaaatgtaa
Protein Sequence: MQPENLNKSALCGLCLNIISYPNSQVIEEVATEVLEIVLPNLNLEMRNEYRVCKACWSKLFAAYNFKATCMDTEDIIFSHISTDTESTIELKEVYIKVNGDIKLTDTWENHRICRLCLQLVTYGFVSLDEVDSDIIDTYIPQINIHATNNPVVCVSCFNSLGTHGSFLRSCLKKHEKCKSADSKPFIKSELELEENIENQFYIKSGEIEIKTEDEEDQDNDTSSYKSDEKIIEKHISQDIAEPKHEVKCEIEDQINKCKTPLNVSYKNGHKREPEDCLNHNIAQKRKSSTEIQIYKCDLCDYKSKHEDELEVHQLTHENPSKTKMYKCNICTFETKYKHCLKGHQLIHKDPSEIQMYRCDSCDFQTKYKGALKTHQLMHKHPCEIEMYKCDLCTYEAKHKRWLINHQLVHKDPSELQMFKCDVCNFETKCKSRLRIHQLLHKDSTGIQMYKCEFCTYETRYKQHLKSHELSHKDSSEIQIYKCNICTYETKYKNSLKSHQIIHKDASEIQMYKCDRCDYEAKSKSRLTKHRLTHKDPSEIQVYKCNFCFYEAKYKSALINHQLMHKDPSQIQMYKCDACTYETKYKSGLKSHQLSHKNSSKIQMYKCELCTYETKRKQSLKYHQLIHKSEIEMYKCDACNFETKRKDKLKTHQILHKNPSEIQMYRCDSCVFETKYKGYLKTHRLLHKDPCEIQMYKCEFCTYESKRKQCLRNHELKHKSEIEMYNCDAGNFETNRKDKLKTHQLGHKDPPEIQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -