Malt042327.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:38782844-38787445[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00052 0.038 15.9 4.7 1 23 423 445 423 445 0.99
2 13 0.18 13 8.0 2.1 1 23 454 476 454 476 0.98
3 13 0.0065 0.47 12.5 2.9 1 23 485 507 485 507 0.99
4 13 0.01 0.73 11.9 0.6 1 23 516 538 516 538 0.97
5 13 0.0014 0.1 14.5 1.4 1 23 542 564 542 564 0.97
6 13 8.5e-06 0.00062 21.5 0.4 1 23 573 595 573 595 0.99
7 13 0.62 45 6.2 6.4 1 23 604 626 604 626 0.99
8 13 3.1e-05 0.0023 19.8 1.4 1 23 665 687 665 687 0.97
9 13 0.00047 0.034 16.1 3.2 1 23 696 718 696 718 0.98
10 13 0.18 13 7.9 2.1 1 23 727 749 727 749 0.98
11 13 0.0072 0.52 12.3 5.3 1 23 758 780 758 780 0.99
12 13 0.00067 0.048 15.6 1.9 1 23 789 811 789 811 0.98
13 13 0.36 26 7.0 2.9 1 23 820 842 820 842 0.99

Sequence Information

Coding Sequence
ATGCCaccagaaaataataaaaacgtaTTTTGCAGACTGTGCCTTAATATAATAAGCTATGCAACTTGTGATGTAATAGAAAATGTCACAAGAGAGATTTTAAAAGTGGTTCTGCCGAATCTCATTTTGGAAGAGGAACATAAACGTTTGATTTGTAAAGCATGTTGCTCAAAATTATTTGCCGCGTTTAATTTTAAGTCGACGTGTAGGGGTACTGAAGATATAATTTCTTCGTACATTAATTCGAATGAAGTGGTATCGGTTGACTTACAAGAGGTGTATTTAATGGTGAATGGGAATATTCAGTTAACCGATATGTCGGAAAGTCAGAGAATCTGTCGATTGTGTATTCAATTTGTAACAAACGGATTTGTGTCACTAAGTGAAGTAGATAATGATATAATTGATGCAATCATACCTCAAGTGaaCATCAATGTTACCAAGGACCCTGTTATATGTGGATCATGTTTTGATTCGCTTCATACCCATGGGTGTTTTGTAAAGAACTGCCAGGAAGCACaggaaaaatatcaaaatgtcgATGAACTCCCTTATATAAAAACGGAAGAGACTGAAGATAATCTGGAAGATTATGATGAAGCGCAGGAGAAAAATAGAAACTGTCATAAGCAGCCTTATAGTAGTTCCAAACAGATTGAGACAAAGTCAGGAGAAGATCAAGATAATAATTTCATTTCTTCACACAATTTAAACGAAATaacaattgaaaacaaaaagaaCCATATTTCCGAAGGTACAAGAGATACAAAATGTGACAATGTGCTGGAATCGCTTCATATGAATGCCGGTTTTGTAAAGAACTGTTTGGAAGCACAAGAATTCCAAGATATCGATAAaccgttttatataaaaagtgaacggattgaaataaaacaggagTATGATTACGATGAGCAAGACACATATAGAAATATTGATGAGCAGCCTTATATCAAATCTGAACAGATGGAAATACAGTTGGAGGAAGGAGATCAAGATAAtGATTCCTCCACACACAATTTAGATGAGGAAACAATTGAAAACAGAAAGCCGCAAATTGATGAAGATATGGCAGAAACTTCTTTAGATATATCATTGTTTAACTGTAAGAGAAAGTTTAAAGATGGATTAAAACATGAAATTGCTCCAACACTGAAGAACTCATCGGAAATtgaaatgtacaagtgtgatacaTATGATTATCAAACTAAACATAAGGATGAGCTGAAACAGTTAACAAACAAAACACCGTCCAAAGTCCAAATATATAAGTGTAGTCTGTGTGATTATAAAGCTAAACGAAAGGGTCATTTTAACAGGCATCAGCTGACTCACAAAGATCCTtcagaaatccaaatgtacaaatgtgagaTTTGTACCTTTCAATCTAAATATCAGAAATCTGTGAAAATGCATCAGCTATTGCACAAAGACCTTTCTGAAATCGAAATATACAAGTGCGATGCTTGTActtttgaaactaaatataagaaaaacttaaaaaaccATCAATTGACACACAAAGATTCTTCTGAaattcaaatgtacaaatgtgatactTGCAActatgaaactaaaaatataagaaacctGAAAGGTCATCTGTTAGCACACAAAGAATTATTCATGTGTGATAGATGTGGTTTCGTTACTAAACGTAAGAAGAGTCTGAAAACCCATGAGTTAATACACAAAGATCCTTCTGAAATTCAGATGTACAAGTGTGATATATGTGATTATGAAGTTAAACGTAAGAGTAGCCTAATAATTCATCAGTTAACACACAAAGACTCTTCCGAGgtccaaatgtacaagtgtgatacaTGTAcgtttgaaacaaaatataagaaTTGTCTAAGAGATCACCAATTTACACACACAAAGATCCCTCTGAAACCCAAATGTACAGATCTGGTTAATTTgactgaaaataaacaaaatgaagaGCTGAAACATCAATTAACACACAAAGATCCTTCCGATGTCCGGATGCACAGGTGCAATGAGTGTGATTACGAAGTTAGACGTAAGAGTGATCTAATAAAACATCAGTTAATccacaaagacccttctgaagTTCAAATATATAAGTGTAGTGTGTGTGATTATAAAGCTAAACGAAAGAGTCACCTTGATAATCATCAGTTGAGCCACAAAGATCCTTcggaaatccaaatgtacaaatgtgatatttGTACTTTCCAGTCTAAATATaagaaatctataaaaattCATCAGCTATtgcacaaagacccttctgaaatccaaatgtacaagtgtgatacgTGTACATTTGAAACTAGATATAAGACCCATCTGCAAAACCATCAGCTAACACACAAggacccttctgaaatccaaatgtacaggtGTGATGCGTGTGATTATGAAACAACACGTAAGAGTTATTTAAGAAATCATAAGttaacacacaaagacccttctcaaatccaaatgtacaagtgtgatactTGTATGTTTGAAACTAAGTATAAGAGATACCTGAAAGATCATCTATTAACACACAAAGccccttctgaaatccaaatgtag
Protein Sequence
MPPENNKNVFCRLCLNIISYATCDVIENVTREILKVVLPNLILEEEHKRLICKACCSKLFAAFNFKSTCRGTEDIISSYINSNEVVSVDLQEVYLMVNGNIQLTDMSESQRICRLCIQFVTNGFVSLSEVDNDIIDAIIPQVNINVTKDPVICGSCFDSLHTHGCFVKNCQEAQEKYQNVDELPYIKTEETEDNLEDYDEAQEKNRNCHKQPYSSSKQIETKSGEDQDNNFISSHNLNEITIENKKNHISEGTRDTKCDNVLESLHMNAGFVKNCLEAQEFQDIDKPFYIKSERIEIKQEYDYDEQDTYRNIDEQPYIKSEQMEIQLEEGDQDNDSSTHNLDEETIENRKPQIDEDMAETSLDISLFNCKRKFKDGLKHEIAPTLKNSSEIEMYKCDTYDYQTKHKDELKQLTNKTPSKVQIYKCSLCDYKAKRKGHFNRHQLTHKDPSEIQMYKCEICTFQSKYQKSVKMHQLLHKDLSEIEIYKCDACTFETKYKKNLKNHQLTHKDSSEIQMYKCDTCNYETKNIRNLKGHLLAHKELFMCDRCGFVTKRKKSLKTHELIHKDPSEIQMYKCDICDYEVKRKSSLIIHQLTHKDSSEVQMYKCDTCTFETKYKNCLRDHQFTHTKIPLKPKCTDLVNLTENKQNEELKHQLTHKDPSDVRMHRCNECDYEVRRKSDLIKHQLIHKDPSEVQIYKCSVCDYKAKRKSHLDNHQLSHKDPSEIQMYKCDICTFQSKYKKSIKIHQLLHKDPSEIQMYKCDTCTFETRYKTHLQNHQLTHKDPSEIQMYRCDACDYETTRKSYLRNHKLTHKDPSQIQMYKCDTCMFETKYKRYLKDHLLTHKAPSEIQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-