Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:39067581-39072532[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.42 30 6.8 4.5 1 23 368 390 368 390 0.98

2 11 0.00035 0.025 16.5 3.8 1 23 430 452 430 452 0.98

3 11 0.00063 0.046 15.6 3.0 1 23 461 483 461 483 0.98

4 11 0.019 1.4 11.0 4.7 1 23 492 514 492 514 0.98

5 11 3.9e-06 0.00028 22.6 3.0 1 23 523 545 523 545 0.99

6 11 0.0015 0.11 14.5 4.2 1 23 554 576 554 576 0.98

7 11 0.0058 0.42 12.6 2.5 1 23 585 607 585 607 0.98

8 11 1.2e-05 0.00084 21.1 1.1 1 23 616 638 616 638 0.99

9 11 0.1 7.5 8.7 2.5 1 23 647 669 647 669 0.99

10 11 0.036 2.6 10.1 1.7 1 23 678 700 678 700 0.97

11 11 0.025 1.8 10.6 2.9 1 23 709 731 709 731 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.42	30	6.8	4.5	1	23	368	390	368	390	0.98
2	11	0.00035	0.025	16.5	3.8	1	23	430	452	430	452	0.98
3	11	0.00063	0.046	15.6	3.0	1	23	461	483	461	483	0.98
4	11	0.019	1.4	11.0	4.7	1	23	492	514	492	514	0.98
5	11	3.9e-06	0.00028	22.6	3.0	1	23	523	545	523	545	0.99
6	11	0.0015	0.11	14.5	4.2	1	23	554	576	554	576	0.98
7	11	0.0058	0.42	12.6	2.5	1	23	585	607	585	607	0.98
8	11	1.2e-05	0.00084	21.1	1.1	1	23	616	638	616	638	0.99
9	11	0.1	7.5	8.7	2.5	1	23	647	669	647	669	0.99
10	11	0.036	2.6	10.1	1.7	1	23	678	700	678	700	0.97
11	11	0.025	1.8	10.6	2.9	1	23	709	731	709	731	0.98

Sequence Information

Coding Sequence: ATgcagacagaaaattttaataacacatGTCTTTGCAAGCTGTGTCTTCATGTCGTAATCTACACAAATTCCGAAATAATAGAAGAAGCTGCCCAAGCGGTTTTAGAAGCTGTTTTGCCAACTTTGGGTTTGGAAGAGACACATAAACACCGAATGTGTAAAACATGTTGCTCGAAATTATTTCCTGCGTTTAATTTTAAGTCGGCATGTATGGGTACCGAGGATCTTTTGATTTCTTACGTTAACGCCAATAAAGTGTCAGTGGTTGACTTGAAAGAAATTTACCTAAcgataaatgaaaatattcaaTTAACCGATATATTGGAAAATCAAAGAATATGTCGGTTGTGTCTCCAACTGATGACATACGCATGTGTGTCACTAAACGAAGTGGATAATGACATAATTGATACATATGTACCTCAAGTTAACATCGGCGCTACCGAGGACCCTGTTATATGCGGATCATGTTTTGAATCGCTTCATACCCATGGCGGTTTTATAAAGAACTGTCTAGAAGCGCAGGAAAAATACATAAGTACTGATAAACAGTCTTATATAAAAACTGAAGAGATTGATGTAAAAGTGGAAGATAGTCATAATGCGCAAAATACAGATAAAACAGTTGATAGCCAGTCCTGTGTTACaaatgaaaaaatagaaataaaacttGAAGATGATCAGAATACGGAGGAGGAACATGTCAACATTAACAAACCgtcttatattaaatttgaaaagtttGAAATAGAACCAGAGAACGATCAAGATGCACAAGAGGAATATGAAAGCACTGATGAGcaaagttttattaaatccgAAGAGATTGAGATCAAGTCAGAGGAAGGAGATCGAAATAAtgATACCTCTACACACAATTTAGATGATGAAACAATTGAAagtaaaaataagcatatttttGAAGATACGAgagaaataaaatgtgaaaaagtGGCTGCATATAAGACCAGAGATCAAATTAACAAATGCGAAACTCCATTAGATGTACCATTGTATAAGAACAGATATAAAAGAAACTTTGGGAGTgatttaaaacacaaaattattccGATACTGAAAGATTCTTCCGGAATCCAAATGTACCGGTGTAATACATGCGAATATGATAGTAAATGTAGTAGTGATCTGAAAAGTCATCAAACAACACACCAAGATTATTCTAcaatccaaatgtacaagtaCGATGCATTAGATTTTGAAGCTAAAAGTAAGGAGAAGCTTAAAAAACATCAGTTAATGCAGAAATGCTCTtctgaaattcaaatatataaatgtgATATTTGTTCTTATGAAACTAAGCGTAAGCAACATTTGAAAACTCATCAATTAATACACAAAGACCCTTccgaaatccaaatgtacaaatgtgatatttGTACTTATGAAACTAAGCGTAAGCATCTCTTGAAAATTCATCAATCAatacacaaagacccttctgaaatccaaatgtacaaatgcgGTTTTTGTActtatgaaactaaatataaacaCAGTTTGAAAACTCATCAATTAATACACAAAGATTTTTCTGAAATCCACATGTATAGGTGTGATGTATGTGGTTATGAAACCAAACACAAGGATAATCTGAAACGTCATCAATTAACGCACAAAGACCTTtttgaaatccaaatgtacaagtgtaATACATGTGAATATGAAACTAAACATAAAGctaatttgaaatatcaccAATTATCTCACAAAGGCCCTTCTGAAATGGAAATGTACAGGTGTGATGTGTGTGATTATGAAACTCAACACAAGAATCTGCTGAAAAGTCATTTACTGAGGCACAAAACCTCTGCccaaatccaaatgtacaaatgtagTGTATGTGATTATGAGGCTAAACGCAACAGTCAGCTGAAACGTCACCTATTAACACACAAAGACGCTTCTGAAACCCAGATGTACAAGTGCGATGCATGTGACTATCAAACTAAACACAAGGCTAAACTGAAACCTCATCAATTAACACACAAAGATCCTTCTGAAATCAAGATGTACCACTGTGATGCATGCGATTATCAAGCTAAACGCAAAGGTGATCTGAAGTATCACCAATTGTCACACAAATGCCTTTCTGAAATCAAAATGTACAGGTGTGAAGGGTGTGATTATCAAACTCAACACATGAATTTGCTGAAACGTCATTTATCCAGGCACAAAAACTtgtcttaa
Protein Sequence: MQTENFNNTCLCKLCLHVVIYTNSEIIEEAAQAVLEAVLPTLGLEETHKHRMCKTCCSKLFPAFNFKSACMGTEDLLISYVNANKVSVVDLKEIYLTINENIQLTDILENQRICRLCLQLMTYACVSLNEVDNDIIDTYVPQVNIGATEDPVICGSCFESLHTHGGFIKNCLEAQEKYISTDKQSYIKTEEIDVKVEDSHNAQNTDKTVDSQSCVTNEKIEIKLEDDQNTEEEHVNINKPSYIKFEKFEIEPENDQDAQEEYESTDEQSFIKSEEIEIKSEEGDRNNDTSTHNLDDETIESKNKHIFEDTREIKCEKVAAYKTRDQINKCETPLDVPLYKNRYKRNFGSDLKHKIIPILKDSSGIQMYRCNTCEYDSKCSSDLKSHQTTHQDYSTIQMYKYDALDFEAKSKEKLKKHQLMQKCSSEIQIYKCDICSYETKRKQHLKTHQLIHKDPSEIQMYKCDICTYETKRKHLLKIHQSIHKDPSEIQMYKCGFCTYETKYKHSLKTHQLIHKDFSEIHMYRCDVCGYETKHKDNLKRHQLTHKDLFEIQMYKCNTCEYETKHKANLKYHQLSHKGPSEMEMYRCDVCDYETQHKNLLKSHLLRHKTSAQIQMYKCSVCDYEAKRNSQLKRHLLTHKDASETQMYKCDACDYQTKHKAKLKPHQLTHKDPSEIKMYHCDACDYQAKRKGDLKYHQLSHKCLSEIKMYRCEGCDYQTQHMNLLKRHLSRHKNLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -