Malt042256.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:38176076-38181090[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.046 3.3 9.8 2.1 1 21 304 324 304 325 0.95
2 13 0.004 0.29 13.1 1.3 1 23 368 390 368 390 0.98
3 13 0.00015 0.011 17.7 6.0 1 23 399 421 399 421 0.99
4 13 6.9 5e+02 3.0 3.3 1 23 430 452 430 452 0.96
5 13 0.0016 0.11 14.4 7.1 1 23 461 483 461 483 0.99
6 13 0.0012 0.088 14.8 3.3 1 23 518 540 518 540 0.99
7 13 0.00035 0.025 16.5 4.8 1 23 549 571 549 571 0.98
8 13 0.00052 0.038 15.9 1.3 1 23 580 602 580 602 0.98
9 13 0.0035 0.25 13.3 2.1 1 23 611 633 611 633 0.99
10 13 0.0074 0.54 12.3 3.4 1 23 642 664 642 664 0.98
11 13 0.013 0.92 11.6 4.2 1 23 673 695 673 695 0.99
12 13 0.0044 0.32 13.0 3.2 1 23 704 726 704 726 0.99
13 13 0.00042 0.03 16.2 1.7 1 23 735 757 735 757 0.99

Sequence Information

Coding Sequence
ATGCAACCAGTAACCTTGGACGAAAGATTTTGCAGACTGTGTCTTATAAAAGATACAAATTGTCAAGTAATAGGACAAGCTGAAAGAAAGTTTGTAGAAGTAATTTTCCCTAATCTGGATTTGGAAGAGAACGATAAACATTTTATGTGCAAAGAATGCTCCATAACACTATCAgctgcttttaattttaaatcgaCATGTATGAATACCGAGGATATTATTTCCTCATGTGTTAATTTCAGTAACGTACCAACGGTTGACTTAATGGAAGTTTACCTAAAACAAAAAGGAAATGACCAGTTAATCGATTTATCGaaaaatcagaaaatttgtcGATTATGTATTCAGTTGGTTACTTACGGATTTGTGACACTAAGTGATGTCGATGTTGGTATAATTAATAAGTATATATCAGATGCTaACCTCAGTACTACCAACGATCCTGTAATATGCGAAACATGTTTTGATTCACTtcgtaattatgaaaatttcataaaatacagcCTTGATGCACAGGAAAAATATAAACGTGCTGATAAGCAGTTTTACATTAAAACCAATGTAGTGATGAAATGTGAAGATATTCAGGATGCACAAGAGTCGTATGAACACATTGATAGGCCgtcttttattaaaattgaagaaattgaaAGAGATTTGGAAGATGATCTAAAAGCGCAGGAGAAATATACAAACATTGATTGTCAGGCTTATGTGAAAACTGAAATGATCGAAGTAAAAGTGATTGAAGATCAGAATACACAAGATAAATGTGAAATTGAAAACCAgacttatattaaaaatgaagaGATTGAAATAAAGGGAGATCGAGAAGGtaattgtTCAGGAGTTGTGGGAGAAATAAACAATGGATCAGTGTCAGTTTTTAATGATTTGGAAGAAAAAACATACCAATGTGGAACCTGTGGCTTAAAATCTGAATACAAGAGAAGTCTTAATAGACATACATGCAGTTCTGTcactaaatataaaagttatcaaTTGCACAAGGATTCTTCTGAAGACGAAACATACAAACATGATACATGCACTTATGAAACCGAATATGTATTGCAGAAAGACTCTTCCGAAACCAAAATGTACAAATGTTATACTTGcaattatgaaacaaaatataaagctGCCTTGAAAGTGCATCAGCTATTACACAAAGATCCTtcagaaatccaaatgtacaaatgtgatatgTGCGATTACGAAACCAAGCATAAAGATCATCTGAAAAGACATCAATTGTCACATAAAGACCCTTcggaaatccaaatgtacagatGTGATATCTGTTGTTATGAATCCAGGCATCCGAGTTACGTGAAACTGCATCGACTAGCACACGATGACCCTTTGAAACTCAAAATGTACAAGTGTAGTACatgtaattataaaactaaaaacagAAGTTGTCTGAAGAAGCATCAATTAATGCATAAAGGCAGCTTACAAGTTCAAATCTACATGTGTGATACTTGTACTAATTATGAATCTATACGAATGAATCAATCACACGAAGACGATTCAGAAATTGAAATGTATAAGTGTGATTTGTGTACGTATGAAACTAAGCATAAGAGTGGCTTAAAGGTACATCAATTAAAACACAAAGAAATTGTATTAATTGacatgtacaaatgtgatacatgtaattatgaaactaaatatagGAGTCATCTAAAAAAGCATCAATTAATACACATGAAATCTTCGGAGATcgaaatgtacaaatgtgatatcTGCCCGtttgaaactaaatataaaggTTATCTAAAAAATCATCAGATAAAGCACAGAGATACCTCGGAAGTGCCCATGTACAAGTGCAATACATGTGGCTTcgaaactaaatataagaaGAATATGGATGTGCATCAATTAACGCACAAGGATTCGTCAGAAGTCACAAAGTACAAATGTGACATGTGTAGTTACGAATCTATATATAAGAGTCACCTAAAAGTTCATCTATTTAGGCACAAAGATCCTTCGGAAAttcaaatgtacaagtgtgatactTGTAAatatgaaactaaatataaaagtcGTCTCAAAATGCATCAGTTAAAGCACAAAGACTCTTCAACAGttcaaatgtacaagtgtgatatCTGTAGATTTGAAACCAAATATAAAAGTCGCCTAAAAAGTCATCAGTTAACACACAAGGACCgttctgaaatccaaatgtacacgTGTGACGTATGCACTTATGAAACTAAATACAAGGAAAGCCTTAAAAATCATCAATTAACACATAAGAAAGCTTCCACTGCACAAAAGTGA
Protein Sequence
MQPVTLDERFCRLCLIKDTNCQVIGQAERKFVEVIFPNLDLEENDKHFMCKECSITLSAAFNFKSTCMNTEDIISSCVNFSNVPTVDLMEVYLKQKGNDQLIDLSKNQKICRLCIQLVTYGFVTLSDVDVGIINKYISDANLSTTNDPVICETCFDSLRNYENFIKYSLDAQEKYKRADKQFYIKTNVVMKCEDIQDAQESYEHIDRPSFIKIEEIERDLEDDLKAQEKYTNIDCQAYVKTEMIEVKVIEDQNTQDKCEIENQTYIKNEEIEIKGDREGNCSGVVGEINNGSVSVFNDLEEKTYQCGTCGLKSEYKRSLNRHTCSSVTKYKSYQLHKDSSEDETYKHDTCTYETEYVLQKDSSETKMYKCYTCNYETKYKAALKVHQLLHKDPSEIQMYKCDMCDYETKHKDHLKRHQLSHKDPSEIQMYRCDICCYESRHPSYVKLHRLAHDDPLKLKMYKCSTCNYKTKNRSCLKKHQLMHKGSLQVQIYMCDTCTNYESIRMNQSHEDDSEIEMYKCDLCTYETKHKSGLKVHQLKHKEIVLIDMYKCDTCNYETKYRSHLKKHQLIHMKSSEIEMYKCDICPFETKYKGYLKNHQIKHRDTSEVPMYKCNTCGFETKYKKNMDVHQLTHKDSSEVTKYKCDMCSYESIYKSHLKVHLFRHKDPSEIQMYKCDTCKYETKYKSRLKMHQLKHKDSSTVQMYKCDICRFETKYKSRLKSHQLTHKDRSEIQMYTCDVCTYETKYKESLKNHQLTHKKASTAQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-