Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:19526801-19530355[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00029 0.021 16.7 0.9 1 23 332 354 332 354 0.98

2 9 0.0039 0.28 13.2 0.4 1 23 357 379 357 379 0.97

3 9 0.00051 0.037 16.0 1.3 1 23 385 407 385 407 0.97

4 9 2.2e-06 0.00016 23.4 0.5 1 23 414 437 414 437 0.97

5 9 0.11 7.9 8.6 3.0 1 23 443 466 443 466 0.94

6 9 7.5e-06 0.00054 21.7 3.7 1 23 472 494 472 494 0.98

7 9 0.11 8 8.6 3.3 1 23 538 560 538 560 0.95

8 9 0.00031 0.023 16.6 0.6 1 23 568 590 568 590 0.96

9 9 6e-05 0.0043 18.9 2.4 1 23 595 618 595 618 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00029	0.021	16.7	0.9	1	23	332	354	332	354	0.98
2	9	0.0039	0.28	13.2	0.4	1	23	357	379	357	379	0.97
3	9	0.00051	0.037	16.0	1.3	1	23	385	407	385	407	0.97
4	9	2.2e-06	0.00016	23.4	0.5	1	23	414	437	414	437	0.97
5	9	0.11	7.9	8.6	3.0	1	23	443	466	443	466	0.94
6	9	7.5e-06	0.00054	21.7	3.7	1	23	472	494	472	494	0.98
7	9	0.11	8	8.6	3.3	1	23	538	560	538	560	0.95
8	9	0.00031	0.023	16.6	0.6	1	23	568	590	568	590	0.96
9	9	6e-05	0.0043	18.9	2.4	1	23	595	618	595	618	0.96

Sequence Information

Coding Sequence: atgaGTCTTCAACATTGTTGTGTAAAAGGCTGTAAAACTTCTATCCACAATTTATCAGTAGATGATTTAAGATTGTTTCATTTTCCCAAAGACAAAGAAAGACGTATGATATGGGCGAAAAATTGCGGCAGAGAGAGTATAGGGACCGTCTCAGCTTATTGTGCATATAATTATGGCATTTGtagtttacattttgaagatgAAATGTTCGTAACTTTCCTAAAATACCGATTGAAAAAGACAGCCATACCAACAATTTTCGATTCTAATATCTTAGAACAACCACAGGAAAATATATCTCTCATGAAAAAATGGGAAccaaatatttctacttataGTACTGCAAATATTTCTACAGACTCGGCCTCTCCCGCTCGGCCTCCTGATTATTCGGAGGTCTTTGTAACTAGTGAAGGTTATAGcgAAATTGTAATCTATGAGGAAAAATTACAGGACTCCCAAAATAAGGAAGaatataaatgcataatttgtttaaatattactgATACACATACAAGTGTCACCGAACATTGCTACTTAAATAATACAGTTAAAGAAGTAATAGCCCTTCTTGATCCcaaaaagACTTCTAGTTTAAATGATAATGATGTCGTCTGCAATAAATGTTTAAACGTTTTGAAATCAAGattcattgtaaaaagtttaGAAGTTAAACACACACTTCTAGAGTGCACGAAAAATGTATACGTTGAAGgtaaCACCTGTCGAATTAACATAGAACACAGTTATTGTAGTAAAATGGATCCTGTGGGTgatgttcaacaaaataatgctCTTGGAAATGCAAATGAAAATATCTCGGTTGCTGAAAATTCCGGACAAATTATATATAGCTATCCATCAGTTTCCATCAAAGTATTTGAAGATTTTTCTGTAAATAATAACACAGAAGTGATCAAAAATGGTATTCACAACAGCAAGTATTCCTTGAGTGAAACCCCTCATAAACGCAAAAAAATTGAGGAGAAAAAATTTTCATGTGCAACCTGCTTTGAATCGTTTACGACTAAAGATGACTACAATCTTCACCTCCAAGTCCACTTCCGTTATATATGCGACATCTGCGGAAGGCCTTTCTTAAAGAATATGTCATTGAAGGCGCATAGATTTTCCCACAATGCACGGAACACTTTCATTTGTGAAGTGTGCGGCAAGGGGTATAAGGACGTTAGCAACCTGCGTTGTCATCTGAAAAGTCACAGAGATAGTAGCGATTCATTTGCGTGTGATAAGTGCCCGAAAGTTTTCAAGAAGAACTCCAGTCTTAACGGCCACATACGAAGGGTTCATAGAAAGAACGATGGATGCAAGTGTCCACAGTGCGGTATTGTGGTCAAGCATATTGGAAACCTTAAATGTCATATCAAACTGGTACATGCTGCAGAAAAACCCTACGAATGTCACATTTGTAGCAAAAAATTTGCTAGGAGAGATTATTTGCGAAATCATTTGTCGCGACACACTTTAAACATAACTCTGGGTGATAGGTCGCAGCGCAACTTTAAAAACAACGGTAAGCCCGAAGCTTGCAAAATTTGCGGAAGATGGTGCAAAAATATGGAAATGCATTTAGAAACGCACGTAAAGAGATATCCATGCCAGTTTTGCCCTTTGACGTTTTCCCGTAAAGCGTTCTGTAAAAGACACGAGAAAGCTCACGAAGGTGGCAAAGTCAGTTTTTTCAGatgTGACACTTGTTGGAAGAGATTTAAGACCAAAGAGGCGCTAGATGAACACGTCGTCCGCCACAACAACCCCCTGTACTCCTGCGACATATGCTGGAAATCGTTCAATAGGAGGTTCTCGTTGAGCCATCACAGATTAGTGGATCACGGCGATATTCCTGACAAAGAGCAGGTAAATGAAGTAAAGTAA
Protein Sequence: MSLQHCCVKGCKTSIHNLSVDDLRLFHFPKDKERRMIWAKNCGRESIGTVSAYCAYNYGICSLHFEDEMFVTFLKYRLKKTAIPTIFDSNILEQPQENISLMKKWEPNISTYSTANISTDSASPARPPDYSEVFVTSEGYSEIVIYEEKLQDSQNKEEYKCIICLNITDTHTSVTEHCYLNNTVKEVIALLDPKKTSSLNDNDVVCNKCLNVLKSRFIVKSLEVKHTLLECTKNVYVEGNTCRINIEHSYCSKMDPVGDVQQNNALGNANENISVAENSGQIIYSYPSVSIKVFEDFSVNNNTEVIKNGIHNSKYSLSETPHKRKKIEEKKFSCATCFESFTTKDDYNLHLQVHFRYICDICGRPFLKNMSLKAHRFSHNARNTFICEVCGKGYKDVSNLRCHLKSHRDSSDSFACDKCPKVFKKNSSLNGHIRRVHRKNDGCKCPQCGIVVKHIGNLKCHIKLVHAAEKPYECHICSKKFARRDYLRNHLSRHTLNITLGDRSQRNFKNNGKPEACKICGRWCKNMEMHLETHVKRYPCQFCPLTFSRKAFCKRHEKAHEGGKVSFFRCDTCWKRFKTKEALDEHVVRHNNPLYSCDICWKSFNRRFSLSHHRLVDHGDIPDKEQVNEVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01014556;
90% Identity: iTF_01014556;
80% Identity: iTF_01014556;