Malt042842.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:43717489-43724153[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.007 0.51 12.4 4.8 1 23 265 287 265 287 0.99
2 20 0.83 60 5.8 3.4 2 23 294 315 293 315 0.91
3 20 0.0048 0.35 12.9 3.2 1 23 324 346 324 346 0.98
4 20 0.011 0.81 11.7 0.7 1 23 355 377 355 377 0.98
5 20 0.0058 0.42 12.6 3.2 1 23 386 408 386 408 0.99
6 20 0.0059 0.43 12.6 1.8 1 23 415 437 415 437 0.98
7 20 0.63 45 6.2 8.0 1 23 442 464 442 464 0.97
8 20 0.005 0.36 12.8 2.1 1 23 473 495 473 495 0.98
9 20 0.0022 0.16 13.9 1.1 1 23 504 526 504 526 0.97
10 20 0.0035 0.25 13.3 3.6 1 23 535 557 535 557 0.99
11 20 0.02 1.4 11.0 2.1 1 23 564 586 564 586 0.98
12 20 0.23 17 7.6 9.6 1 23 591 613 591 613 0.98
13 20 0.0076 0.55 12.3 3.0 1 23 622 644 622 644 0.98
14 20 0.17 12 8.0 1.1 1 23 653 675 653 675 0.97
15 20 0.14 10 8.3 7.0 1 23 684 706 684 706 0.99
16 20 0.026 1.9 10.6 3.3 1 23 713 735 713 735 0.98
17 20 6.8 4.9e+02 3.0 9.9 1 23 742 764 742 764 0.99
18 20 0.1 7.5 8.7 3.4 1 23 771 793 771 793 0.96
19 20 0.015 1.1 11.3 0.9 1 21 798 818 798 819 0.95
20 20 0.049 3.5 9.7 6.5 1 23 829 851 829 851 0.98

Sequence Information

Coding Sequence
atggagAACTGTACGAATGCCAGCAAAACATTCTGTAAGCTTTGCTTAGATAACATAACTGATGGAAATGGCAAAATAattgaagaaattattaaaggTGTTTTAAATGTTCTTCAACCGAAACTGATCCAGAGTGAGCAGGATAATAGTACATCTTCAATATGCGATGCCTGTTCCACAAAATTGCTTGCGGCCTATAATTTTAAGGCTAGATGTATGGATATCGAGGACTGTATTTTTGCATATGTAAATTCTGAAAACGAGGCACCAGTCGACTTGAAAGATATTTATCTGAAAGAAAAAGCAAACGAACATTTAAAAGTACCATTAGAAGATGAAAGGATTTGTAGACTATGTATGCAGGCAGTCGACTACGAGTTTATTTCCGTGAAAGATGTGGACATCGATACGCTTTGCATGTATATTCCAGAAGTGaacTTCAATTCTACCTTGGATCCTGTAATATGTGCAGTGTGTCGCGATTCCTTGGATATCCACATGACTTTTTTAAAGGATTGCTTAAATGTGCAAgaggaatttaaaaatgtttctgacTGCAAAATCCCAGATAGTCCATACGATATCGTCAAAGAAGAAATTGAACTAAAATCGGAAGAAGGCGACATcGGTCCGTCGAGCTTGAAAGACGAACTCCTTGCCGTTACCGACACAAGTGAGCGTTCATCTGAATCCGAGAGAACGACAAGTAATTGTATGCTCAACCACCAAAAAAAACTATCGGAAAATGAAATCTCTAAATTGAAACAGATGGACTCCTTGGATGCGCAGATATATGAATGCGATTTCTGCGATTTTAAAACCGATAAAAAGTACACCTTTACGAGACATCAGCGTAAGCACAACCCTGAAGATCAGTTGCACTGCGATTCGTGTGAATTCAAAACCTTTTATAAAAGCGATCTTAGGCTTCATCAGCTCAGGCACAAAAACATCCCCGAAGACCAGATGTTCAAGTGTGAtgtgtgtgattataaaactatttttaaacagTATCTCAGAAAACATCGGCTAAGACACAAGGACATCCTCGAAGACCTTATTTACAAATGTGACATCTGCGAATATAAAACCGATGTAAAGAGCGATTTCTCAGAACATCAGCTAAACCATAAAATGGTCCCCGAAGAACAGATATATAAGTGTGAGTCCTGCGATTATAAAACCGGTAAAAAGtcctattttaaaattcatcagCAAACACACAACCCCGAAGATCAGATGTATAAATGCgatttatgtaattacaaaacCGGCGTAAAGAGATATCTCACACGACACCAAGCAAGACACAAAAGGCAAGTGTATTACTGTCATTCCTGTGAATATAAAACCTTTTATAAAAGCGACCTTACGCTACATCAGTGTAGGCACAAAAACATCCCTGAAGGCCAGATGTTTCAGTGTGATCTGTGTGATTTTAAAACCGTTTTTAAGCagtatcttagaaaacatcaGTTAATACACAAAAAGATGCCTGAAGGTCGGATGTTTATATGTGACTTCTGCGATTACAAAACTGCCGTAAAGTCCAATTTTACAGTACATCAACTAAAGCATAAAAAGCGCCCCGAAGAACAGATATATAAGTGTGAGTCCTGCGATTATAAAACCGGCAATAAGTACTATTTTAGAGTTCATCAGCGCAAGCACATCCCCAAAGACCAGATGTATAAATGCGACTCATGTAATTACAAAACGGGCGTAAAGAGATATCTCACACGACACCAAGTAACACACAAAAGACAAATGTATCACTGTCATCTGTGTGAACATAAGACCATTTATAAAAGCCATCTTGCGCTACATCAGCGTAGACACAAAGACGTCCCAGAAGACCAGATGTTTAagtgtgatttgtgtgattacAAAACCGTTTTTAAACAGTACCTTAAAAAACATCAGGTAAGACACAACAACGTCCCCGAAGAACAGATGTACAGCTGCGacttttgcaaatataaaaCTGGCGTAAAGAGAGATCTTGCGCAACATCAGGTGAAACATAAAAAGTTCCCCGAAGAGAagatgtataaatgtgattcctgcgattataaaaccggtaataaatgctattttaaaaaacatcagAATAAGCACGTCCCTGAAGATCAGATGTATAACTGCGATTCTTGCGATTTTAAAACTGGCTATAAGTACTATCTTACAACTCACCAGCGTAAGCACAGTCCCGATGATCAGATATATAAATGCgattcttgcagttttaaaactGGCAAACAGCACTGTTTTAGGAAACATCAGCGTAAGCATAATCTTGGAGATCCGATGTATAACTGTGACACGTGcgaatataaaacattttataagaaTTACCTTACACAGCATCAATTGAGACACAAGAGGCAGATATATCATTGCGATATGTGTgaatataaaactatttataaagGGGATCTCACGCGGCATCAGTTAAGATACAAAGACATTCCTGAAGAGcaaatgtttaaatgtgatttgtgtgattataaaaccatttttaaacattattttaaaaaacatcagCTAAGACACAAAGGGACCCCCAAGAACATATGCATAAATGTCACTTCTGCAAATATAAAACTggaataa
Protein Sequence
MENCTNASKTFCKLCLDNITDGNGKIIEEIIKGVLNVLQPKLIQSEQDNSTSSICDACSTKLLAAYNFKARCMDIEDCIFAYVNSENEAPVDLKDIYLKEKANEHLKVPLEDERICRLCMQAVDYEFISVKDVDIDTLCMYIPEVNFNSTLDPVICAVCRDSLDIHMTFLKDCLNVQEEFKNVSDCKIPDSPYDIVKEEIELKSEEGDIGPSSLKDELLAVTDTSERSSESERTTSNCMLNHQKKLSENEISKLKQMDSLDAQIYECDFCDFKTDKKYTFTRHQRKHNPEDQLHCDSCEFKTFYKSDLRLHQLRHKNIPEDQMFKCDVCDYKTIFKQYLRKHRLRHKDILEDLIYKCDICEYKTDVKSDFSEHQLNHKMVPEEQIYKCESCDYKTGKKSYFKIHQQTHNPEDQMYKCDLCNYKTGVKRYLTRHQARHKRQVYYCHSCEYKTFYKSDLTLHQCRHKNIPEGQMFQCDLCDFKTVFKQYLRKHQLIHKKMPEGRMFICDFCDYKTAVKSNFTVHQLKHKKRPEEQIYKCESCDYKTGNKYYFRVHQRKHIPKDQMYKCDSCNYKTGVKRYLTRHQVTHKRQMYHCHLCEHKTIYKSHLALHQRRHKDVPEDQMFKCDLCDYKTVFKQYLKKHQVRHNNVPEEQMYSCDFCKYKTGVKRDLAQHQVKHKKFPEEKMYKCDSCDYKTGNKCYFKKHQNKHVPEDQMYNCDSCDFKTGYKYYLTTHQRKHSPDDQIYKCDSCSFKTGKQHCFRKHQRKHNLGDPMYNCDTCEYKTFYKNYLTQHQLRHKRQIYHCDMCEYKTIYKGDLTRHQLRYKDIPEEQMFKCDLCDYKTIFKHYFKKHQLRHKGTPKNICINVTSANIKLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-