Basic Information

Insect: Monochamus alternatus
Gene Symbol: SCRT1
Assembly: GCA_037114965.1
Location: CM073426.1:32341951-32354522[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.3e-07 2.4e-05 26.0 1.5 1 23 227 249 227 249 0.99

2 5 0.14 9.8 8.3 0.1 3 23 260 280 258 280 0.92

3 5 3.1e-06 0.00022 22.9 0.6 1 23 284 306 284 306 0.98

4 5 7.4e-08 5.4e-06 28.0 0.6 3 23 314 334 312 334 0.98

5 5 3.3e-05 0.0024 19.7 1.2 1 21 340 360 340 361 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.3e-07	2.4e-05	26.0	1.5	1	23	227	249	227	249	0.99
2	5	0.14	9.8	8.3	0.1	3	23	260	280	258	280	0.92
3	5	3.1e-06	0.00022	22.9	0.6	1	23	284	306	284	306	0.98
4	5	7.4e-08	5.4e-06	28.0	0.6	3	23	314	334	312	334	0.98
5	5	3.3e-05	0.0024	19.7	1.2	1	21	340	360	340	361	0.94

Sequence Information

Coding Sequence: ATGTTATCTGAAAGTATTCGACACCAAATATTGAGAATTCATGCTGAAAATGTTGTTCTCGTGGCAAGTTATCTTCACGAGCTCTCACCTTCAAGCTACACTACCAACTTCGTTTCTAAAGCAGAAGTACCTAGTTCCAGCCAACCTTCCTATGCGACCTTACGTACTGTTGTAGAAACTCAAGATCTTCGAACAGAATATGCCGCCCCAAGCCCTGTCCCTCCAAAGCAAAAGAAATCATTAGCGATGACGTACACTAGTACTGGAACTGCTTTAAGTTTGCCTCCCAAGAAAAAGGACATTTATCGACCTTATTCTTTAGAAGATAAGCCTTCTCCGCCTTTCTTTCATCATACCATTCGTGTACCCGCCGAGGAAGACCTCCATGCGGCGCACGCTATCCTGGATTTAAGCGCTTCGACGACAGTGTTCCTTCCGCCTCCCACCCCGCAAGTACAGGAGCAGCATCGCCAGATGGAGATGCATCAAGGTCAACAAGAGGCCACCATCCCCCAACCCCTAAAAGCAACAGCACCCTCCATAAAAGCTTCATGTAAAACTGTGGCCTATACATATGAGGCTTTCTTCGTAAGTGACGGCCGGTCGAAGAAGCGACAACATCCTGACGATCCCACCGCCACCTTGACGCCGAAGGCGATCGTTAGTGAGAAGCCAAAGTACACCTGCAGCGAATGCGGGAAGCAGTACGCAACGTCTAGCAACCTATCCAGGCATAAGCAAACGCACAGGAGTCTGGATTCCCAGGCGGCAAAAAAATGCATAACGTGCGGCAAAGCCTATGTCAGTATGCCTGCTCTGGCTATGCACGTCCTCACTCACAAACTTGCGCACCGTTGTGGAGTCTGCGGGAAGCAATTCTCGAGACCTTGGCTGTTGCAAGGCCACCTTAGATCCCACACGGGCGAGAAACCTTACGGGTGCGCACACTGCGGCAAGGCGTTTGCGGACAGGTCGAACCTCAGGGCTCACATGCAGACCCATTCCGCAGATAAAAACTTTGAATGTCCCAGATGCCACAAGACTTTCGCGTTGAAGTCCTATCTCAACAAGCATTTGGAATCGGCGTGTTTAAAAGAGGAGCCGAGCCAGGTGCTTGGCTGCGACGAGGAAAAACTGATACCTGAAATTACGGTGGCCACACCGATGGCAGTTAGAGTTTACGCAGGTTAA
Protein Sequence: MLSESIRHQILRIHAENVVLVASYLHELSPSSYTTNFVSKAEVPSSSQPSYATLRTVVETQDLRTEYAAPSPVPPKQKKSLAMTYTSTGTALSLPPKKKDIYRPYSLEDKPSPPFFHHTIRVPAEEDLHAAHAILDLSASTTVFLPPPTPQVQEQHRQMEMHQGQQEATIPQPLKATAPSIKASCKTVAYTYEAFFVSDGRSKKRQHPDDPTATLTPKAIVSEKPKYTCSECGKQYATSSNLSRHKQTHRSLDSQAAKKCITCGKAYVSMPALAMHVLTHKLAHRCGVCGKQFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSADKNFECPRCHKTFALKSYLNKHLESACLKEEPSQVLGCDEEKLIPEITVATPMAVRVYAG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01296796;
90% Identity: iTF_00110744;
80% Identity: -