Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:39700591-39704607[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.8 7.1e+02 2.5 2.0 6 23 225 242 223 242 0.87

2 14 0.0015 0.11 14.5 0.4 1 23 256 278 256 278 0.99

3 14 0.00016 0.012 17.5 0.9 1 23 287 309 287 309 0.99

4 14 0.059 4.2 9.5 2.5 1 23 318 340 318 340 0.98

5 14 0.006 0.43 12.6 4.9 1 23 348 370 348 370 0.98

6 14 9.7 7e+02 2.5 5.4 1 23 379 402 379 402 0.90

7 14 1.8 1.3e+02 4.8 3.9 1 23 411 433 411 433 0.97

8 14 0.0014 0.1 14.6 3.2 1 23 440 462 440 462 0.98

9 14 0.00065 0.047 15.6 1.8 1 23 471 493 471 493 0.98

10 14 0.0011 0.082 14.9 2.8 1 23 502 524 502 524 0.98

11 14 0.013 0.92 11.6 2.1 1 23 533 555 533 555 0.98

12 14 0.0023 0.17 13.9 2.4 1 23 563 585 563 585 0.98

13 14 0.00026 0.018 16.9 4.5 1 23 594 616 594 616 0.98

14 14 0.00031 0.022 16.6 3.1 1 23 622 644 622 644 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.8	7.1e+02	2.5	2.0	6	23	225	242	223	242	0.87
2	14	0.0015	0.11	14.5	0.4	1	23	256	278	256	278	0.99
3	14	0.00016	0.012	17.5	0.9	1	23	287	309	287	309	0.99
4	14	0.059	4.2	9.5	2.5	1	23	318	340	318	340	0.98
5	14	0.006	0.43	12.6	4.9	1	23	348	370	348	370	0.98
6	14	9.7	7e+02	2.5	5.4	1	23	379	402	379	402	0.90
7	14	1.8	1.3e+02	4.8	3.9	1	23	411	433	411	433	0.97
8	14	0.0014	0.1	14.6	3.2	1	23	440	462	440	462	0.98
9	14	0.00065	0.047	15.6	1.8	1	23	471	493	471	493	0.98
10	14	0.0011	0.082	14.9	2.8	1	23	502	524	502	524	0.98
11	14	0.013	0.92	11.6	2.1	1	23	533	555	533	555	0.98
12	14	0.0023	0.17	13.9	2.4	1	23	563	585	563	585	0.98
13	14	0.00026	0.018	16.9	4.5	1	23	594	616	594	616	0.98
14	14	0.00031	0.022	16.6	3.1	1	23	622	644	622	644	0.98

Sequence Information

Coding Sequence: ATGgacaattttttggaaaaatcgtgCAGGCTTTGCCTCAACATTATAAGTGATgaaaatttcaaagtaatacagGAAACTATCAAAGAAGTTGTAGAACTGCTTCTTTTCAATCTGcaTATGGAAGAAAAAAGTGAGCCTGTGATATGCTCTACTTGTTTAGCGagattatttgaggcatttcaATTCAAGGCAATCTGTATAGATACGGAGGATACTATTTTTCCTTACGTTAATTGTGAAAATACACCTGTCGACTTACAAGAGATTTATCTGAAGGAAAAAGGTAAAGAACATTTAAGAGCTTTATTGGAAAATGAGAAAATTTGTCGATTGTGTATGCAGATATACACCTTTGAATTTACATTGGTACAGGATGTGGAAATTGACATGATCCAAAAATGTATTCCCGAAATAGACTTCAGTTCCACTAAAGACCCCGTTATATGCAAACTTTGTCTGAGTTCGTTGGAAACCCACAGCAGTTTCTTAAAAAGCTGTTTAGATATGGAAGAACAAATTAAAAGTTTCCAAAACGACAAGAAAAGTTCACTGTGCATTAAAATTGAGGAGATAGAAATAAGATCCGAAGAAAATGATGAGAATAGTGATCATCACAAAAGAAATCTTACAGGATGTATATCGGAATCGACATTACACAGTTCAAGTACATGTAATCAGAAATCCAAGTGCAGAAGTAATCTTTTACGTCATCAAGAAAATCACAAAACGTTGAAACACAAGAATTCCACTGAGttccaaatgtacaaatgtgatgcaTGCGATTATGAGAGCAAACTAAAAGGCAATCTTGTACGACATCAACTGACACACAAAAACAATTCTGATGTACGACTATACGTATGTGATGTATGCGATTACATAGCTATTCATAAGTATAGTCTTACTAGGCATCAGCTAACACACAAAAGTACGTCTCATCTGCAAGTGTACGTTTGCCATACATGTGCGTATAAAACCAGATGGAAAGGCAATCTTGTACAACACCAACGAAAACACGAAAATTTCAACTTACGAAAATATGAATGTGATGTATGCCACTATAAAGCTAGTTATAAGCATAATCTTATTAGGCACAAACTAAAACACAAAAGCCCTTCTGAGGTGCAAATGTACATTTGTCACACATGCAAGTATAAAACCAACCGGAAGGATATTCTTGTACAACATCACACTAACAAACACAAAAGTACTACTGAGGTTCAAATGTACTTTTGCCAAACATGCGAGTATAATACCAGATGCAAAGGCAATCTTGTACAACATCAACTAAGACACATTTCTAACGTACAAAAATATGAATGTGATACATGCGATTACAAAGCTATTCATAAGTATTATCTTACTAGACATCAGTTAAAACACAAAAGTAGTTCCAAGGCGCAAATGTTTATTTGTGGTACATGTGAATATAAAACCAAGCGCAAAGACACACTGGTACAACATCAACGAAGACATGAAAACGTTTCTAAGGTACGAATATATGAATGTGATGTATGCAACTACAAAGCTATTCATAAGTATTATCTTACTAGGCATCAGCTAAAACACAAAAGTACTACTGAGGTTCAAATGTACTTTTGCCAAACATGCGATTATAAAACCAGATGGAACGGCAATCTTGTAAAACACCAACGAAAACACGAAAATTTTAACTTACGAAAATATGAATGTGATGTATGCGACTATAAAGCTAGTCTTAAGCATAATCTTACTAGGCACAAGCTAAAGCACAAAAGTACTTCTGAGGTGCAAATGTACATTTGCCATACATGCCAGTATAAAACCAACCGGAAGGATAATCTTGTACAACACCAACGAAGACACAAAAACATACAGAAATATGAATGTGATGTATGCGATTACAAAGCTAGTCGTAAGTATCATCTTTCAAGACACCGGCTAAAACACATAAGTACTACCCAGGCGTTATAA
Protein Sequence: MDNFLEKSCRLCLNIISDENFKVIQETIKEVVELLLFNLHMEEKSEPVICSTCLARLFEAFQFKAICIDTEDTIFPYVNCENTPVDLQEIYLKEKGKEHLRALLENEKICRLCMQIYTFEFTLVQDVEIDMIQKCIPEIDFSSTKDPVICKLCLSSLETHSSFLKSCLDMEEQIKSFQNDKKSSLCIKIEEIEIRSEENDENSDHHKRNLTGCISESTLHSSSTCNQKSKCRSNLLRHQENHKTLKHKNSTEFQMYKCDACDYESKLKGNLVRHQLTHKNNSDVRLYVCDVCDYIAIHKYSLTRHQLTHKSTSHLQVYVCHTCAYKTRWKGNLVQHQRKHENFNLRKYECDVCHYKASYKHNLIRHKLKHKSPSEVQMYICHTCKYKTNRKDILVQHHTNKHKSTTEVQMYFCQTCEYNTRCKGNLVQHQLRHISNVQKYECDTCDYKAIHKYYLTRHQLKHKSSSKAQMFICGTCEYKTKRKDTLVQHQRRHENVSKVRIYECDVCNYKAIHKYYLTRHQLKHKSTTEVQMYFCQTCDYKTRWNGNLVKHQRKHENFNLRKYECDVCDYKASLKHNLTRHKLKHKSTSEVQMYICHTCQYKTNRKDNLVQHQRRHKNIQKYECDVCDYKASRKYHLSRHRLKHISTTQAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -