Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:39040914-39048820[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0021 0.15 14.0 2.7 1 23 337 359 337 359 0.98

2 13 5.5e-05 0.004 19.0 0.7 1 23 368 390 368 390 0.98

3 13 0.003 0.22 13.5 2.0 1 23 399 421 399 421 0.98

4 13 0.0017 0.12 14.3 4.3 1 23 430 452 430 452 0.99

5 13 0.00066 0.048 15.6 1.8 1 23 461 484 461 484 0.96

6 13 0.0094 0.68 12.0 4.6 1 23 493 515 493 515 0.98

7 13 0.042 3.1 9.9 2.9 1 23 524 546 524 546 0.99

8 13 0.031 2.2 10.3 6.7 1 23 555 577 555 577 0.99

9 13 0.015 1.1 11.3 3.4 1 23 586 608 586 608 0.98

10 13 0.0028 0.2 13.6 1.5 5 23 620 638 617 638 0.96

11 13 0.0092 0.66 12.0 2.6 1 23 643 665 643 665 0.99

12 13 0.048 3.5 9.7 4.5 1 23 674 696 674 696 0.97

13 13 0.2 14 7.8 2.0 2 23 706 727 705 727 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0021	0.15	14.0	2.7	1	23	337	359	337	359	0.98
2	13	5.5e-05	0.004	19.0	0.7	1	23	368	390	368	390	0.98
3	13	0.003	0.22	13.5	2.0	1	23	399	421	399	421	0.98
4	13	0.0017	0.12	14.3	4.3	1	23	430	452	430	452	0.99
5	13	0.00066	0.048	15.6	1.8	1	23	461	484	461	484	0.96
6	13	0.0094	0.68	12.0	4.6	1	23	493	515	493	515	0.98
7	13	0.042	3.1	9.9	2.9	1	23	524	546	524	546	0.99
8	13	0.031	2.2	10.3	6.7	1	23	555	577	555	577	0.99
9	13	0.015	1.1	11.3	3.4	1	23	586	608	586	608	0.98
10	13	0.0028	0.2	13.6	1.5	5	23	620	638	617	638	0.96
11	13	0.0092	0.66	12.0	2.6	1	23	643	665	643	665	0.99
12	13	0.048	3.5	9.7	4.5	1	23	674	696	674	696	0.97
13	13	0.2	14	7.8	2.0	2	23	706	727	705	727	0.97

Sequence Information

Coding Sequence: ATgcagacagaaaattttaataacacatGTCTTTGCAAGCTGTGTCTTCATGTCGTAATCTACACAAATTCCGAAATAATAGAAGAAGCTGCCCAAGCGGTTTTAGAAGCTGTTTTGCCAACTTTGGGTTTGGAAGAGAGACAGAAACACCGGATGTGTAAAACATGTTGCTCGAAATTATTTCCTGCGTTTAATTTTAAGTCGGCATGTATGGGTACCGAGGATCTTTTGATTTCTTACGTTAACGCCAATAAAGTGTCAGTGGTTGACTTGAAAGAAATTTACCTAAcgataaatgaaaatattcaaTTAACCGATATATTGGAAAATCAAAGGATTTGTCGATTGTGTCTTCAATTGGTAACAAACGGATTTGTGTCAATAAATGAAGTGGATATTGACATAATTGATGCATATATACCTCAAATCAACATTGGTGCTACCAAAGATCCAGTTATATGCGAAACATGTTTTGATGCCCTTCGTATCCATGGCTGTTTTGTAAGGAACTGCTTGGAAGCacagaaaaaatgcaaaaatgtgGATATACTGCCTTATATTAAAACTGAAGAGATTGACATTAAACTAGAAGATGGCCTTGATGGACTGGATGTATATAAAAACGTTGATAAGCCGtcctttattaaattaaaagagaTTAAGATTAAACTTGAAGGTGATCAAAATTCACAGGAGACATATCAATGCATTGATAAGCTGCCTCATATTAAATCTGAGGAGATTGATATAAAGTCAGAGGAAGATAATGATTCCTTCTCACACTATTTAgatggaaaaataattgaaaatggaAACAAGTATATCTCTGAAGATAAAAGAGAAACAAAGGATGAATATATGCCTGAATGCAAAACCGATGTTCATATAAATAAGTGTGAGGTTCCGTTAGATGTAccattatataaaaacaaatataaaagaaagtTTGATGGTGATTTGAAATGCAAAGTTGTTACAAAGACGAATTGCTCTTCGGACATtaaaatgtacaagtgtgataaATGTACATATGAAAGTAAATATAACTACTCTTTAAAAACTCATCAGTTAATACATAAAGATCCTTCTCAAATCCAAATGTATAGGTGTGATGTGTGTGACTACGAAACTAAACGTAAAGGCAGCCTGAAGAGTCATCAATTAATACACAAAAGACCTTCTGAAATCCCAATGTACACATGTGATGCATGTGATTTTGAATGCAAACGCAAGAGTGAGCTAGTACTTCATCGCTTAACACACAGAGACCCTTCTGAaattcaaatgtacaaatgtgatactTGTACTTATGAAACTATACATAAGAGGAATCTGAAAAGTCATCAGTTAACACACAAAGATCCTTCTGAAATTCAGATGTACAGATGTGATGAATGTAGTTATAAAACTAAACGCAAGGGTGAGCTGAGAAGTCATCAGTTCTCAGTGCACAAAGACCCCTCTGAAATCccaatgtacaagtgtgatactTGTACTTATGAGACAAAATATAAGACACACCTGAGAGACCATCAAGTAACACACAAACATgcttctgaaatccaaatgtacaagtgttATGCGTGTGATTATGAAGCTAAGAGTAAATGTGACCTGAAAAGTCATCAATTAACACATAAAaacccttctgaaatccaaattTTCAGGTGCAAAGAATGTGATTATGAATGTAAATGTAAGAGTGAGCTGACAAGTCATCAACTGACACACAAGAACCCTTCagatattcaaatttacaaGTGTGACACGTGTACTTATCAAACTAAATATAAGAGGCTCCTGAAAGAACACCAGGAAAGGCACAAAAAgccttctgaaatccaaatgcACAGATGTGTTTGCGGTTATGTAACTATACGTAAAGATGATCTGAGACGTCATCAGTTAACACACAAAgtccaaatgtacaaatgtgatactTGTACTTATCGAACTAAATATAAGAGTCCCATGAAAGTACATCAACTGACTCATAAAGAGCCCTCTAACATCCAAATGCACAAATGTAGTACATGCAATTTCGAAACAAAGtttaaatctaatttaaaaatgcacgaAGTAACACACAAAGACTCCTCTGAAATTAAAACGGTCAAATGTGATTCATGTGCTTATGAAACTAAAAATAGGAGACAAATGAGAAAGCATCGATTAACACACAAAACCTCTTCTGAGGTTGTGAGACAAAACACGATGACCTGA
Protein Sequence: MQTENFNNTCLCKLCLHVVIYTNSEIIEEAAQAVLEAVLPTLGLEERQKHRMCKTCCSKLFPAFNFKSACMGTEDLLISYVNANKVSVVDLKEIYLTINENIQLTDILENQRICRLCLQLVTNGFVSINEVDIDIIDAYIPQINIGATKDPVICETCFDALRIHGCFVRNCLEAQKKCKNVDILPYIKTEEIDIKLEDGLDGLDVYKNVDKPSFIKLKEIKIKLEGDQNSQETYQCIDKLPHIKSEEIDIKSEEDNDSFSHYLDGKIIENGNKYISEDKRETKDEYMPECKTDVHINKCEVPLDVPLYKNKYKRKFDGDLKCKVVTKTNCSSDIKMYKCDKCTYESKYNYSLKTHQLIHKDPSQIQMYRCDVCDYETKRKGSLKSHQLIHKRPSEIPMYTCDACDFECKRKSELVLHRLTHRDPSEIQMYKCDTCTYETIHKRNLKSHQLTHKDPSEIQMYRCDECSYKTKRKGELRSHQFSVHKDPSEIPMYKCDTCTYETKYKTHLRDHQVTHKHASEIQMYKCYACDYEAKSKCDLKSHQLTHKNPSEIQIFRCKECDYECKCKSELTSHQLTHKNPSDIQIYKCDTCTYQTKYKRLLKEHQERHKKPSEIQMHRCVCGYVTIRKDDLRRHQLTHKVQMYKCDTCTYRTKYKSPMKVHQLTHKEPSNIQMHKCSTCNFETKFKSNLKMHEVTHKDSSEIKTVKCDSCAYETKNRRQMRKHRLTHKTSSEVVRQNTMT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01014980;
90% Identity: -
80% Identity: -