Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:42707495-42714622[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.062 4.5 9.4 2.8 1 23 175 197 175 197 0.98

2 19 0.0053 0.38 12.8 1.7 1 23 206 228 206 228 0.98

3 19 0.072 5.2 9.2 2.1 1 23 237 260 237 260 0.97

4 19 0.0021 0.16 14.0 2.2 1 23 268 290 268 290 0.99

5 19 3.2 2.3e+02 4.0 3.7 2 23 298 319 297 319 0.95

6 19 0.002 0.15 14.1 2.4 1 23 329 351 329 351 0.99

7 19 0.27 19 7.4 1.8 1 23 360 383 360 383 0.94

8 19 0.0029 0.21 13.6 5.3 1 23 572 594 572 594 0.98

9 19 0.35 25 7.0 5.4 1 23 603 625 603 625 0.97

10 19 0.067 4.8 9.3 2.0 1 23 634 657 634 657 0.97

11 19 0.0092 0.67 12.0 0.8 1 23 664 686 664 686 0.98

12 19 0.02 1.5 10.9 4.1 1 23 695 717 695 717 0.99

13 19 0.0019 0.14 14.2 1.1 1 23 726 748 726 748 0.98

14 19 0.0047 0.34 12.9 1.8 1 23 757 779 757 779 0.99

15 19 0.5 36 6.5 2.6 2 23 786 807 785 807 0.97

16 19 0.0049 0.35 12.9 5.2 1 23 816 838 816 838 0.99

17 19 0.0028 0.21 13.6 1.6 1 23 847 869 847 869 0.98

18 19 0.0084 0.61 12.1 1.7 1 23 878 900 878 900 0.98

19 19 0.096 6.9 8.8 3.5 1 23 909 931 909 931 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.062	4.5	9.4	2.8	1	23	175	197	175	197	0.98
2	19	0.0053	0.38	12.8	1.7	1	23	206	228	206	228	0.98
3	19	0.072	5.2	9.2	2.1	1	23	237	260	237	260	0.97
4	19	0.0021	0.16	14.0	2.2	1	23	268	290	268	290	0.99
5	19	3.2	2.3e+02	4.0	3.7	2	23	298	319	297	319	0.95
6	19	0.002	0.15	14.1	2.4	1	23	329	351	329	351	0.99
7	19	0.27	19	7.4	1.8	1	23	360	383	360	383	0.94
8	19	0.0029	0.21	13.6	5.3	1	23	572	594	572	594	0.98
9	19	0.35	25	7.0	5.4	1	23	603	625	603	625	0.97
10	19	0.067	4.8	9.3	2.0	1	23	634	657	634	657	0.97
11	19	0.0092	0.67	12.0	0.8	1	23	664	686	664	686	0.98
12	19	0.02	1.5	10.9	4.1	1	23	695	717	695	717	0.99
13	19	0.0019	0.14	14.2	1.1	1	23	726	748	726	748	0.98
14	19	0.0047	0.34	12.9	1.8	1	23	757	779	757	779	0.99
15	19	0.5	36	6.5	2.6	2	23	786	807	785	807	0.97
16	19	0.0049	0.35	12.9	5.2	1	23	816	838	816	838	0.99
17	19	0.0028	0.21	13.6	1.6	1	23	847	869	847	869	0.98
18	19	0.0084	0.61	12.1	1.7	1	23	878	900	878	900	0.98
19	19	0.096	6.9	8.8	3.5	1	23	909	931	909	931	0.98

Sequence Information

Coding Sequence: ATGGATGCTTCTGAAAAACTCCTAGAGGAAAAGCAAAACTTGAAAATGGAGATTAAACACGAAGAATACGTAGCTGTAGAAATTGCTCCAATTAAAAATGAGCCCTGGGCTGTCGacttgaacaaaataaaatccgAGCCGGATTCTCTAGACGTTGAAAATGAAACTAATTGTTCCATGGCGCATGATGAACTGCAAAACATAACCAACGTAAAAACCGAAGACTTTCAAATAATGTCCGACAATGACAATGGCACTGCCTGGGAACTTGTGAAAAATGTGGAATGGGAAGAGGATGTTAAAGAAGTTAAACATCTTTACAATATTAAACATGAAGATGTAGAAATTAAATCCGAAGTGAATTATAGTGACACTTCTGTGCAGAGCTTGAAAGATGAGCCCGATGACTTCACAAGTGCTAAAACAATGGATCATTCTAAGCTTAAACGCAAAACAAAGCGACGTGGCTCAAAAGACAAAGACCATGTATCAAAACACGTAGTCACGTCTAAAAAGCAGACTTACGAATGTAatctatgtaattttaaaactattgctAAGAGCTATCTTAAAGTACATCACTTAAAACACGTAGACGTCCCCGAACACAAAATGTATAAATGCGAATCCtgtaattataaaaccatttttaagCAGAATCTTACACAACACCTCTTGATACACAAAGACATCCCTGAAGAAcagatgtttaaatgtgattGGTGCGAATATAAAACCGGCCAAAAGTTATATCTCAAACGACATGAGCAACGAAAACACACGGGAATCGTCAAGAGGCATTATAAATGCGATTTATGTGATTTTAAAACTAGTGCTAAATACTACCTAACACGACATCTGCTGAGGCACAGACCTGAGAAACAGATGCTTAAATGTcatttgtgtgattataaaacactttataaGAAAAACATCAAAATACATCAGTTGAAACACCCACGTCTACCTGAGCAGCAGCAGCTCTATCAATGTCAATCATGTGATTACAGAACGTATGTTAAATATTCTCTTATGCGGCATCAGCTAACACATAAAAACATCCCTGAGGATGagatgtataaatgtgatttgtgtgattataaagcCATTTTTAAGAGCTATGTTACGAGACATTCTTCTAAAACACACAGAAAAGagCAAGCTATGGATACTTCAGAAGATCTACACTTAAAAACAGAAATTAGAGAAGAAAACGACATACAGCCAAGTACATTTTCAGAAACCGCCTCAATCAAAAATGAACCTTGGTCAGTCGacttgaacaaaataaaattcgaaTTAGATGACTGGGCTGTTGAAAGTGAAACCAACTACTTTGTGACGAACAGCAAACTGCAAAGTATAACCAATGTAAGAACTGAAGACTTTCAAATAAAGTCCGACGATGAAAGTGGCACTGCCTGTAGACTTGCAAAAGTTGTAGAAAGGGAGGACAATGTAAAGAAAGAAGTAGAACATATTGATAACGACAACACCATAGAAACGCTGTATAGTATTAAATGTGaagatattgaaattaaatctgAAGAGAATTACAGGGACACTCCTTTGCAGAGCTTGAAACATGAACCTGATGACTGCACAAGTGCCGAAAGAATAAAGCATTCTAAACTTCAACACAAAACGAAGCAAGACAGGTCAAATGACAAATTCCATGGATTAAATCGGAGGATAATCTCTGAAAAGCAGAAGTATAAATgcgatttttgtaattttaagacTACTTTCAAGAGCTATCTTAAAAGACACCAGATAAAACACGCGGATGTCCCTGAAGACCAAATGCATAAATGTGATTCTTgcaattataaaaccatttttaagCAGAATCTTACAACACATCTCTTCAAACACAAAAACATCCCCGAAGAACAGATGTTTAAATGTGACTGGTGTGAATATAAAACCGGTCAAAAGCTGTATCTTAAACGACATGAGCAGCGAAGACACACGGCAGAGAAGCAGTTGTATAAGTGTGATTCATGTGATTTTAAAACCAGTGCCAAAGACTCTCTTGCTCGACATCAGGTAAGGCACAAGGACATTCCCGAGgagaaaatgtttaaatgtgatttgtgtgattataaaaccatttataagaaCTGCCTTAACATACATCAACAAAGACACAAAAACGTCCCTGACGAGcagatgtttaaatgtgatttgtgtgattataaagcAGTTTTTAAGGACTATCTTAAAAAACATCAACTAATACACAAAAACATCCCTGACGAAcagatgtataaatgtgatttttgtGATTATAAAGCTATTTATAAGAGCAATGTTATGAAACATCAGCTAAAACACACAAAGGAACAGATGTTGAAATGTGAtgtgtgtgattataaaactggTTGTAAGAACAATCTTAAAATACATCAGCTGAAGCATACAAGTATCCCTAAGCAGCAGCTGTATCGATGTGAGTCGTGTGactacaaaacaaattttaaacacagCCTTACACGGCATCAACTAACACATAAAGACGTCTCTGAAGATCAGATGTATAAGTGTGagttgtgtgattataaaacaatttttaagcaGAATCTCTTGAAACATCTTTTGCAGCATAAACATATTCCTGAAGAGCAGATGTATAAATGCGACTTGTGTGATTACAAAGCCATTTTTAAGAACTACCTTACAAAACATCTGTTAAAACATAGGAATATCTCTGAGGAGCAAATATATAAGTGTGATTTGTGTgactataaaactatttataggagtTCTATCCATAAGCATCAAGTAAAACATAAAGATATTTCCTAA
Protein Sequence: MDASEKLLEEKQNLKMEIKHEEYVAVEIAPIKNEPWAVDLNKIKSEPDSLDVENETNCSMAHDELQNITNVKTEDFQIMSDNDNGTAWELVKNVEWEEDVKEVKHLYNIKHEDVEIKSEVNYSDTSVQSLKDEPDDFTSAKTMDHSKLKRKTKRRGSKDKDHVSKHVVTSKKQTYECNLCNFKTIAKSYLKVHHLKHVDVPEHKMYKCESCNYKTIFKQNLTQHLLIHKDIPEEQMFKCDWCEYKTGQKLYLKRHEQRKHTGIVKRHYKCDLCDFKTSAKYYLTRHLLRHRPEKQMLKCHLCDYKTLYKKNIKIHQLKHPRLPEQQQLYQCQSCDYRTYVKYSLMRHQLTHKNIPEDEMYKCDLCDYKAIFKSYVTRHSSKTHRKEQAMDTSEDLHLKTEIREENDIQPSTFSETASIKNEPWSVDLNKIKFELDDWAVESETNYFVTNSKLQSITNVRTEDFQIKSDDESGTACRLAKVVEREDNVKKEVEHIDNDNTIETLYSIKCEDIEIKSEENYRDTPLQSLKHEPDDCTSAERIKHSKLQHKTKQDRSNDKFHGLNRRIISEKQKYKCDFCNFKTTFKSYLKRHQIKHADVPEDQMHKCDSCNYKTIFKQNLTTHLFKHKNIPEEQMFKCDWCEYKTGQKLYLKRHEQRRHTAEKQLYKCDSCDFKTSAKDSLARHQVRHKDIPEEKMFKCDLCDYKTIYKNCLNIHQQRHKNVPDEQMFKCDLCDYKAVFKDYLKKHQLIHKNIPDEQMYKCDFCDYKAIYKSNVMKHQLKHTKEQMLKCDVCDYKTGCKNNLKIHQLKHTSIPKQQLYRCESCDYKTNFKHSLTRHQLTHKDVSEDQMYKCELCDYKTIFKQNLLKHLLQHKHIPEEQMYKCDLCDYKAIFKNYLTKHLLKHRNISEEQIYKCDLCDYKTIYRSSIHKHQVKHKDIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -