Malt042666.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:42660002-42665796[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.002 0.14 14.1 3.4 1 23 150 172 150 172 0.99
2 19 0.01 0.74 11.8 5.7 1 23 181 203 181 203 0.99
3 19 0.73 53 6.0 3.4 1 23 212 234 212 234 0.98
4 19 0.003 0.22 13.5 7.2 1 23 243 265 243 265 0.98
5 19 0.0061 0.44 12.6 2.5 1 23 274 296 274 296 0.98
6 19 0.0056 0.4 12.7 2.7 1 23 305 327 305 327 0.98
7 19 2.8 2.1e+02 4.2 3.6 1 23 336 358 336 358 0.98
8 19 0.0092 0.67 12.0 6.8 1 23 367 389 367 389 0.98
9 19 0.00012 0.0086 17.9 1.3 1 23 398 420 398 420 0.98
10 19 0.0076 0.55 12.3 1.0 1 23 429 451 429 451 0.98
11 19 0.052 3.8 9.6 2.7 1 23 460 482 460 482 0.98
12 19 0.13 9.7 8.3 0.7 1 21 491 511 491 512 0.94
13 19 0.079 5.8 9.0 4.9 1 23 521 543 521 543 0.99
14 19 0.011 0.78 11.8 1.0 1 23 552 574 552 574 0.98
15 19 0.0095 0.69 12.0 5.8 1 23 583 605 583 605 0.98
16 19 0.22 16 7.6 4.3 1 21 614 634 614 635 0.94
17 19 0.34 25 7.0 6.2 1 23 645 667 645 667 0.98
18 19 0.46 33 6.6 3.2 1 23 676 698 676 698 0.98
19 19 0.00018 0.013 17.4 2.0 1 23 707 729 707 729 0.99

Sequence Information

Coding Sequence
ATGGAAGCGAAAATTAAAGATATCGGAGTCAAATCTAAAGATTTACTAAATAGGGAAGAGAAAATCACAAATATATCTGATTCTGAAGATCCAAGAGGTTTACTCCATTTTAGCACAGAAAAAATTGAAGTCAGATCTGAAGACTGTCTAAATGAGGAagggaaaattgaaaatatttcaggTTATGTAGTCCCGGTGCTTAATAGTCCAGGAAAGATTGAAGTCAAATTCGAGGACTGTCTTAATGTAGAAGAgacaattgaaaatatttctgattACGAAGTCCCAGGAAATACATTCCATATTAACACAGgagaaattgaattaaaatcTGAAGAATGTTATGTtGACACATCCTTCCTGACTATAAAAGATGAACCTCTCTACACGAATGATTCACAATCTGAGTACGTCACAACATCAGACATGCATTTTGACGTTCAAATATATCAGTGTGAATTCTGCGATTATAAAACTGGTCAAAAgagctattttaaaaatcacCAACTAAGACACAAAAACATCCCCGAAGATCAGATGTATCAATGTAACATGTGTCATTTTAAAACCGTTTACAAGAGCAGTTTTTTGAGACATCAATTAAGACACCAGTACGTCCCTGAAGACCAGATGTATAAATGTGACtcatgtgattataaaaccggtCAGGAAGTGTATTTCAAACTACATCATTTAAAGCATAAAGACATCTCCGACGATCAGATGTTTAAATGCCATTCCTGCAATTATGTAGCCACGCGAAAATATTGTCTCACGCGACATATGCTGAGACATCAAATCATCTCCGAAGATCAGATGTTTAGATGCAATTGGTGTGATTACAAAACCGGTCATAAGAAGAACCTAGCACAGCATGAGCTAAGACACAAACAATTTCCAGAAGAGCAGATGTACAGATGTAGTTTATGCGATTATAAAACTGGTCAAAGGAAATATCTTAAGAGGCACGAACTAAAACACAAAGACGTTCCCAAAAAggaaatgtacaaatgtgattgCTGTGACTTTACAACCGTTTATAAGAACAGTATCACACAACATCAACTAATGCACAAAGACATCCCAGAGGAGCAGATGTTTAAGTGTGATTTGTGCCATTATAAAACTGCCCGAAAGAAATATTTCACACGGCATCAACTAAAGCATAAAATCACTCCAGAAGAACAGATGTATCAATGCGATTGGTGTGATTACAGAACCGGTCGAAAAGAAAACCTTAGGCGACACAAGATAAGACACAAAAACATCCCTGAGGATCAGATGTACAAATGTGAATCGTGTGATTACGAAACTGTCTATAAGAACGATTTTACGCAACATCAACTAATACACAAATACATCCCGGAAAAAGAGATGTTTCAATGTGAACTATGCGATTATAAAGAGACTCAAAAGAGATATTTCATACGACACCAACTAAAACATAAAAAGGCTCCAGAAGAGCAGATGTATGAGTGTGACtggtgtgattataaaaccctTTACAAAGGCAACTTTACACGACATCAACTGAGACGCAAAAACAGCGGAGGCGAGATATACAAATGCGACTTGTGTGACTATAAAACGTGCGAGAAAAGACGCCTTACAAGCCATCAACTAAGGCACAAGACTTTCAGCGAAGGTGAGATGTATCAATGCGGTTTGTGTGATTACAAAACCGGGCAGAATAGATACATGGCGCGACATCAACTGAAGCACAAAAACATCCCGGAGGAACGCAtgttcaaatgtcatttgtgtAAATATAAAACCTCTCAGAAGATATACCTCAAACGGCATGAGCTGAGACACAAAATCCTACCCGGAAAGCAGATGTATAAATGTCGCTGGTGCGACTATAAGACGTTTTATAAGAGTCACTTCTCACAACATCAACTAAGGCGCAAAGACATCGGTGAAGGTCAGATGTACAGATGTAGTTTCTGCGATTATAAGACCTGCGAAAAGAGACGTCTTACCAGTCATCAGTTAAGGCACAAAAACATGAAGGAAGGGAAGATGTATAGATGCGACCTTTGTGAATATGAAACCTGCGAAAGGAGACGTCTCATGAACCACCAGTTAAGGCACAAAAATTACAGCGAAGAGGAGTTGTATAagtgtgatttgtgtgattataaaactggTCGAAAAGCTTATCTAAAACGTCATCAGTTGAGGCACAAAAGCCTCAAAGAGGAAATATGTAAGCCTAATTATGAAACAGATCAAGTTATCTTACACAATATCGGATAA
Protein Sequence
MEAKIKDIGVKSKDLLNREEKITNISDSEDPRGLLHFSTEKIEVRSEDCLNEEGKIENISGYVVPVLNSPGKIEVKFEDCLNVEETIENISDYEVPGNTFHINTGEIELKSEECYVDTSFLTIKDEPLYTNDSQSEYVTTSDMHFDVQIYQCEFCDYKTGQKSYFKNHQLRHKNIPEDQMYQCNMCHFKTVYKSSFLRHQLRHQYVPEDQMYKCDSCDYKTGQEVYFKLHHLKHKDISDDQMFKCHSCNYVATRKYCLTRHMLRHQIISEDQMFRCNWCDYKTGHKKNLAQHELRHKQFPEEQMYRCSLCDYKTGQRKYLKRHELKHKDVPKKEMYKCDCCDFTTVYKNSITQHQLMHKDIPEEQMFKCDLCHYKTARKKYFTRHQLKHKITPEEQMYQCDWCDYRTGRKENLRRHKIRHKNIPEDQMYKCESCDYETVYKNDFTQHQLIHKYIPEKEMFQCELCDYKETQKRYFIRHQLKHKKAPEEQMYECDWCDYKTLYKGNFTRHQLRRKNSGGEIYKCDLCDYKTCEKRRLTSHQLRHKTFSEGEMYQCGLCDYKTGQNRYMARHQLKHKNIPEERMFKCHLCKYKTSQKIYLKRHELRHKILPGKQMYKCRWCDYKTFYKSHFSQHQLRRKDIGEGQMYRCSFCDYKTCEKRRLTSHQLRHKNMKEGKMYRCDLCEYETCERRRLMNHQLRHKNYSEEELYKCDLCDYKTGRKAYLKRHQLRHKSLKEEICKPNYETDQVILHNIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-