Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:43658411-43660615[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0005 0.036 16.0 2.3 1 23 176 198 176 198 0.98

2 15 5e-05 0.0036 19.1 1.6 1 23 207 229 207 229 0.98

3 15 0.12 8.4 8.5 7.9 1 23 238 260 238 260 0.97

4 15 0.00029 0.021 16.7 3.1 1 23 269 291 269 291 0.99

5 15 0.013 0.97 11.5 0.7 1 23 300 322 300 322 0.99

6 15 0.001 0.076 15.0 4.1 1 23 331 353 331 353 0.99

7 15 0.0018 0.13 14.2 1.2 2 23 363 384 363 384 0.98

8 15 0.0042 0.31 13.1 0.6 2 23 394 415 394 415 0.98

9 15 0.32 23 7.2 6.6 1 23 424 446 424 446 0.98

10 15 0.13 9.4 8.4 6.7 1 23 455 477 455 477 0.98

11 15 0.0026 0.19 13.7 3.1 1 23 486 508 486 508 0.99

12 15 0.0049 0.35 12.9 3.8 1 23 517 539 517 539 0.99

13 15 0.024 1.7 10.7 1.6 1 23 548 570 548 570 0.98

14 15 0.0029 0.21 13.6 2.4 1 23 579 601 579 601 0.98

15 15 7.2 5.2e+02 2.9 5.3 2 23 611 632 610 632 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0005	0.036	16.0	2.3	1	23	176	198	176	198	0.98
2	15	5e-05	0.0036	19.1	1.6	1	23	207	229	207	229	0.98
3	15	0.12	8.4	8.5	7.9	1	23	238	260	238	260	0.97
4	15	0.00029	0.021	16.7	3.1	1	23	269	291	269	291	0.99
5	15	0.013	0.97	11.5	0.7	1	23	300	322	300	322	0.99
6	15	0.001	0.076	15.0	4.1	1	23	331	353	331	353	0.99
7	15	0.0018	0.13	14.2	1.2	2	23	363	384	363	384	0.98
8	15	0.0042	0.31	13.1	0.6	2	23	394	415	394	415	0.98
9	15	0.32	23	7.2	6.6	1	23	424	446	424	446	0.98
10	15	0.13	9.4	8.4	6.7	1	23	455	477	455	477	0.98
11	15	0.0026	0.19	13.7	3.1	1	23	486	508	486	508	0.99
12	15	0.0049	0.35	12.9	3.8	1	23	517	539	517	539	0.99
13	15	0.024	1.7	10.7	1.6	1	23	548	570	548	570	0.98
14	15	0.0029	0.21	13.6	2.4	1	23	579	601	579	601	0.98
15	15	7.2	5.2e+02	2.9	5.3	2	23	611	632	610	632	0.95

Sequence Information

Coding Sequence: ATGGAAACCGACGACTGTATTTTTCCTTACGTTAAGTCGGAAAACGAGACACCATTCGACTTGGAAGAAATTGATCTACAGGAAAATGATAAAGaacatttaaaagatatattagAAGACGACAGGACTTGTCGATTGTGCATGCAGGTCATCACCTGTGAATTTACACCGGTAGAAGAAGTAGATATTGATACGCTTCGCAGAAATATTCCAGAGATTGACTTCAATTCCACCAAAAAACCTGTTATATGCAAAGTTTGTTTTGAGTCACTGGACACGCAAACAAATTCTTTAACTAACTTTGTAAATATCAAGGAAGAAATTAGCGATACTTGTAACAATGACGTCGTAGAAGATCTGTCTAATATTAAATGTGAAGATGTTGAAATTAAATCAGAAGATAATACTAGTGACTTTTGGAGCTTGAAAGAAGAACCTGTTGACTGCACGACTGAGTTCAAACCTGAATATGTAACTGCAAATAATTCTACGCTTGAGCTTAGGAACACCTCTGAAGACCAGATGTATAAATGCGATGCCTGTAATTATACAACCGACCAGAAGAGAAATTTGAGGCGACATCGGCTGTCACACAAAGAGATCCCTGAAGGACGGATGTTTCAGTGTGATTTGTGCGATTATAAAGCTAAGCGAAAGGACAACCTTACACAGCATCAACTCCGACACAAAACCGTCCCCAAAGATCAGATGCATCATTGCGATTTGTGTGGTTATAAAACTGGTCACAGAATGGATTTTACACGACATCAACGAAGACACAACGATATCCCGGATGAACATAAATACAAATGTACATTATGTGATTACACAACTGATCAAAAGGCCTATTTTAAACGACACCAGCTCAGACACGAAACCATTTCCGAACAGCAACTGTACAAATGCGAttcgtgtgattataaaacaatttacaaGAGCGGTATTGCGCAGCATCAGCTGACACACAAAAACGTCGTGGAAAAACGGATGTATCAATGTGATATGTGTGACTACAAAACGAAACGAGAAGACCATTTCACACTACATCAGCTCAAACACAAAAACATCCCCGAGGAACAGATGCGTAAATGCGATTTGTgcgattttaaaacaatttataaggCCAGTCTTGTGCGACATCAGCGTAGACACAAAAAAATCCCTGAGGAGCGGATGCGTAAGTGTGATATCtgtgattataaaacaatttataacGACCGCCTTGCACGACATCAACTCAAGCACAAAAACATTCCCGAGGATCAAATGTACAGGTGTGAAtcgtgtgattataaaaccgtTTACAAGCACTGTTTCACAAATCATCAGTTAATACACAAAGACATTCCGGAAGAACAGATGTACAAATGTGACTTGTGTGAATACAGAACCCGCCACAAGGGATGTTTTAGACAACATCGGCTAATACACAAAGACTACCCAGAAGAACAGATGTATCAATGTGATTCGTGCGATTTTAAAACTCCTCAGAAGAGATACCTTAAACAGCACCAACAAAAGCACAACAACATTCCCGAACAGcagatgtacaaatgtgattccTGCGATTACAAAACCAATCAAAAGAGATACCTGAGGAGCCACAAGTTAACACACAAAAACGTTCCGGCAGAGCAGATGTATAGCTGCGATGTGTGCGACTTTAAGACCCGTCAAAGGAAATATCTTAAACCGCATCAGCTGATGCACATAAGCGTTCCTGAAGAGCAGTTATACAagtgtgatttgtgtgattataaaacttcCCAGGAGAGATACCTTACAAGCCACAAACTGAGACACAAAAACATCTCTGAAGAGCAGATTTGTAAATGTGaattgtgtgattataaaactatttgtaAGAACAGTCTCACGCAACATCAGCTGGAACATAAAAAAGATCTTGATGAACAGACGCATAAATGA
Protein Sequence: METDDCIFPYVKSENETPFDLEEIDLQENDKEHLKDILEDDRTCRLCMQVITCEFTPVEEVDIDTLRRNIPEIDFNSTKKPVICKVCFESLDTQTNSLTNFVNIKEEISDTCNNDVVEDLSNIKCEDVEIKSEDNTSDFWSLKEEPVDCTTEFKPEYVTANNSTLELRNTSEDQMYKCDACNYTTDQKRNLRRHRLSHKEIPEGRMFQCDLCDYKAKRKDNLTQHQLRHKTVPKDQMHHCDLCGYKTGHRMDFTRHQRRHNDIPDEHKYKCTLCDYTTDQKAYFKRHQLRHETISEQQLYKCDSCDYKTIYKSGIAQHQLTHKNVVEKRMYQCDMCDYKTKREDHFTLHQLKHKNIPEEQMRKCDLCDFKTIYKASLVRHQRRHKKIPEERMRKCDICDYKTIYNDRLARHQLKHKNIPEDQMYRCESCDYKTVYKHCFTNHQLIHKDIPEEQMYKCDLCEYRTRHKGCFRQHRLIHKDYPEEQMYQCDSCDFKTPQKRYLKQHQQKHNNIPEQQMYKCDSCDYKTNQKRYLRSHKLTHKNVPAEQMYSCDVCDFKTRQRKYLKPHQLMHISVPEEQLYKCDLCDYKTSQERYLTSHKLRHKNISEEQICKCELCDYKTICKNSLTQHQLEHKKDLDEQTHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -