Basic Information

Insect: Monochamus alternatus
Gene Symbol: prdm10
Assembly: GCA_037114965.1
Location: CM073430.1:70161359-70172548[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0004 0.029 16.3 0.1 2 23 449 470 448 470 0.96

2 12 0.12 8.6 8.5 0.1 1 23 541 563 541 563 0.94

3 12 0.049 3.5 9.7 1.6 1 23 574 596 574 596 0.95

4 12 0.00028 0.02 16.8 0.2 2 23 607 628 606 628 0.97

5 12 0.064 4.6 9.3 3.1 2 23 637 658 636 658 0.97

6 12 0.044 3.2 9.8 0.7 1 20 665 684 665 687 0.91

7 12 0.01 0.75 11.8 3.6 1 23 693 716 693 716 0.96

8 12 0.00077 0.056 15.4 5.4 1 23 721 743 721 743 0.97

9 12 0.00011 0.0081 18.0 1.9 1 23 749 772 749 772 0.93

10 12 0.035 2.5 10.2 1.1 1 23 808 831 808 831 0.97

11 12 0.00058 0.042 15.8 2.2 1 23 853 876 853 876 0.97

12 12 0.0034 0.24 13.4 3.8 2 23 915 937 914 937 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0004	0.029	16.3	0.1	2	23	449	470	448	470	0.96
2	12	0.12	8.6	8.5	0.1	1	23	541	563	541	563	0.94
3	12	0.049	3.5	9.7	1.6	1	23	574	596	574	596	0.95
4	12	0.00028	0.02	16.8	0.2	2	23	607	628	606	628	0.97
5	12	0.064	4.6	9.3	3.1	2	23	637	658	636	658	0.97
6	12	0.044	3.2	9.8	0.7	1	20	665	684	665	687	0.91
7	12	0.01	0.75	11.8	3.6	1	23	693	716	693	716	0.96
8	12	0.00077	0.056	15.4	5.4	1	23	721	743	721	743	0.97
9	12	0.00011	0.0081	18.0	1.9	1	23	749	772	749	772	0.93
10	12	0.035	2.5	10.2	1.1	1	23	808	831	808	831	0.97
11	12	0.00058	0.042	15.8	2.2	1	23	853	876	853	876	0.97
12	12	0.0034	0.24	13.4	3.8	2	23	915	937	914	937	0.96

Sequence Information

Coding Sequence: ATGGACACTATCGTTCAGGGCCCTCCAAATGAGGGGGCCCCAGTGCAGGATATGAATATTGTGGATACAACAAATTGGACTAATCATAACCAAGGAATTGTGAATAACAATTCTACGCTCCTATATATAGCAGTTGAATATGTCAAAGATTACAAAATGGGTAATTCTTCAAACAATGTAGATGTTACACAACCAGAATCCTACACCGATTTTGACCAGCATGTTAGTCCGTTAGACCCTAACATGAGTTCAGTGGCTAGATACAGCCCTGTATATAATGAACAATCTACCGAATTTAATCCTGTGGTTATTCATCAGCTTGTCGCCCAAGATACTAACGCCCATGGTGAACAATTCCccaacaatttaaataatgctTCTCTTGAAAATATACCTACCGTTCTCTGTAATGATAATCTGAGGGAAGTTAATAATCAGTATCTTCAAATGGTGGAGGAAAATAGTACTAATATGGTAGCTTCGAATAATACGGAAGGGCTCCGACTCGCCCCGGAGAATGAACAGGAGGTTGAACTGCTTATTACAGACGAAGCCACagGAATCTCGTATAGTGTTAATGCTCAGGAGCTTTTAGTTGAACGTTGTTTAGAAGACGACCAACTTTTGGAAGCTCTCGCTCCCGACCCGTTATTAGAATCTGAACTTTTGGCTCTAGATGACAGCACCCTGAAATCTGAATTAAACGATGACATTGACATTTCAGCAGCTGTCACGACGTCTGTCGAGGCACAAGTCGTGAACAGTTATATAAACAGCTTGGCGAGCAGTGTAACTAACAAAAATTTAGACACGGACAATGCCTTTAAAATGGAAACCAGAAGGAATAGACCGAATGAATTGGATCCGGAGGAACaactttTATCGTGCGTTTACAGCATTACAGACAAACCCATTTTAACTAGAGCGAGAGCTTCTCTTCCTGAATCCTACTTGTTTATCAACAAAGTAAACAACGAGAATGGGGTATTTGCAAAGAAAGCTATACCAAAGAGAAGTCAGTTTGGTCCCCTCGAAGGAATTTTAACACTGAGGAGTGAGAAAATCAAGAACGAGTTACTATCTCtggttttttttatagaaagcGACAGTGCAACTTATGAAATGGATGTGTCTGATGAAAattcatCAAACTGGATGTGTTTCGTGCGAAAGGCGATGACTTACGAGGAACAGAATCTTGTAATAACGcaagaaaataatgcaatttattttACCACGACCACTAACATTCTACCGAAGCAAGAGTTAAAGgttGGGTATAGCGCTTCGTACGCACATTATTTTGATTTGCCCCTGCTGGAACCTAGAGAAATACACAACTGGCCGTGTTACGAATGTTCGGAGAAGTTTGCTTCTTCAGAAGAACTGCAAAATCATTTGAACGTTCATGATGAGGAGAAAGACGAAAATACAAGACCGAGGAAAAAATCAAAGAGTAAGAGACGTCTGATGAAGAAATACCAGACGGAAGCAGTGGAGTGTAACGTGTGCAGCGAAATATTTTTCCAGTACAGTTACACTTTGCTTAAGAATCACGTCATGGAGAAACACAACTTCAGCCAAGGCGCTATCGAGGATTACTTCTCTGTAGTTGTAAATTACAAATGCCAGGTGTGTGCAACGGGATTCAAAATGGAGGCGTTGTTGAAAATACACAATCTTGAACACGACCCCGATTCCTCTGAGGAGCAACTCTTCCACGTGTGTCCTTCCTGCCTAAGAAAGTTTCCGACACAGAGACAGTTAGTAATGCATGTCGCCCACCACGCTTTGCCTAAAGTACAGCCGGAACGTGTGAAATGCCCTGTCTGTTATAAAATGTTTGCACTTCGTGAGCGGTTACAGAGACACATGCTGGTTCATGGGTCGGAAGAATCCAAACCTTTGCAGTGCAAAACGTGCAATAAAAGATTCCTAAACAATTCCGCTCTGGCTTGCCATATAAAGACCCACTTCATAGGCAAAAAGGTGTTCGAATGCCCAATTTGTAAAGAGAGCTTCGATCACGTCCTGAAGCTGAAGATGCACGTGCCCAAGCATTGTCATAACAATACTTTCACTTGCCCCCACTGTAAGAAGATCTTCAAGAAGTACAGCATAATCCGCAAGCACATCCGCGCTTTTCACTGCGAGAGGAAGCATACTTGCCAGCACTGCACCAAGACGTTTCCGACTTTGGACAAATTGAGGATGCACTTGTTGCGCCACTCAGATCACAGAGAATTCCTGTGTGCCGATTGTGGCAAACAGTTCAAGAGGAAGGATAAGTTGAAAGAGCACTCCAAACGGATGCACTCCGAGGAGAGGGAGAACACTATTCCCAAACAGTCCAAGCCCGTTATCCCCATGAATAAGAAACTTGCCCCGAAGGCCGAGCCTACCGATTTCCACAGGTTTATTTATAAATGCCACGCGTGCTTGGTGGGATTTAAAAGAagagGGATGTTAGTAAATCACTTGGCAAAACGCCACCCCGATATAAGACCAGATTCAGTTCCTGAATTAAACCTTCCCATCCTGCAGACGACGCGCGACTATTACTGTCAGTACTGCGAAAAAGTGTACAAAAGCAGCTCTAAAAGAAAGGCGCACATCCTGAAAAACCACCCGGGGGCGGCTTTGCCTATGAGCAATCGTAAGCAAGGCTCTCTACAAGAAGTAGCGGGACTACCAAATCCAACTTTCTCCCAAACTGTCGGAAGCATCACAACAAGGCCGCAAAGCTGCAAATGGTGTCATAAACAGTACGCCAGCAAGGCCAAATTGCTTCAGCATCAGAGAAAGAAGCATGCGGATCAAATGGCCACCGAGGCCTCGCAAGTTAAAGTAGATAAtaatgttttgattaaaaatttgcaaagaGTCGATGCGGATAATTGTATTGCCCAAGAATATCAGAAGGTGGAAGTAGATAATATTATGAGCGAAGAAATTGACGATTATGGGATAGAAGACGATTCGCAGTACTGCCACCTGTCTATCAATGAGAGTAATGGCAGTTTTATAGAAACGAGCGAACTGGAAAATCCCAACTCGCATCTATATCGGTTGCTAACATCAAATAATGGGATGCTTCCACCACGTTGA
Protein Sequence: MDTIVQGPPNEGAPVQDMNIVDTTNWTNHNQGIVNNNSTLLYIAVEYVKDYKMGNSSNNVDVTQPESYTDFDQHVSPLDPNMSSVARYSPVYNEQSTEFNPVVIHQLVAQDTNAHGEQFPNNLNNASLENIPTVLCNDNLREVNNQYLQMVEENSTNMVASNNTEGLRLAPENEQEVELLITDEATGISYSVNAQELLVERCLEDDQLLEALAPDPLLESELLALDDSTLKSELNDDIDISAAVTTSVEAQVVNSYINSLASSVTNKNLDTDNAFKMETRRNRPNELDPEEQLLSCVYSITDKPILTRARASLPESYLFINKVNNENGVFAKKAIPKRSQFGPLEGILTLRSEKIKNELLSLVFFIESDSATYEMDVSDENSSNWMCFVRKAMTYEEQNLVITQENNAIYFTTTTNILPKQELKVGYSASYAHYFDLPLLEPREIHNWPCYECSEKFASSEELQNHLNVHDEEKDENTRPRKKSKSKRRLMKKYQTEAVECNVCSEIFFQYSYTLLKNHVMEKHNFSQGAIEDYFSVVVNYKCQVCATGFKMEALLKIHNLEHDPDSSEEQLFHVCPSCLRKFPTQRQLVMHVAHHALPKVQPERVKCPVCYKMFALRERLQRHMLVHGSEESKPLQCKTCNKRFLNNSALACHIKTHFIGKKVFECPICKESFDHVLKLKMHVPKHCHNNTFTCPHCKKIFKKYSIIRKHIRAFHCERKHTCQHCTKTFPTLDKLRMHLLRHSDHREFLCADCGKQFKRKDKLKEHSKRMHSEERENTIPKQSKPVIPMNKKLAPKAEPTDFHRFIYKCHACLVGFKRRGMLVNHLAKRHPDIRPDSVPELNLPILQTTRDYYCQYCEKVYKSSSKRKAHILKNHPGAALPMSNRKQGSLQEVAGLPNPTFSQTVGSITTRPQSCKWCHKQYASKAKLLQHQRKKHADQMATEASQVKVDNNVLIKNLQRVDADNCIAQEYQKVEVDNIMSEEIDDYGIEDDSQYCHLSINESNGSFIETSELENPNSHLYRLLTSNNGMLPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110870;
90% Identity: iTF_00110870;
80% Identity: -