Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073428.1:36518493-36525578[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.13 9.3 8.4 2.1 1 23 231 252 231 252 0.94

2 9 0.00016 0.012 17.5 4.0 1 23 258 280 258 280 0.97

3 9 0.0071 0.52 12.3 2.6 1 23 286 308 286 308 0.98

4 9 0.00019 0.014 17.3 3.4 2 23 316 337 315 337 0.96

5 9 0.0034 0.24 13.4 8.1 1 21 350 370 350 371 0.93

6 9 2e-06 0.00014 23.5 2.4 1 23 381 404 381 404 0.97

7 9 2e-06 0.00015 23.5 0.4 1 23 436 458 436 458 0.98

8 9 1.7e-05 0.0012 20.6 0.2 1 23 464 486 464 486 0.98

9 9 9.9e-05 0.0072 18.2 1.2 1 23 492 514 492 514 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.13	9.3	8.4	2.1	1	23	231	252	231	252	0.94
2	9	0.00016	0.012	17.5	4.0	1	23	258	280	258	280	0.97
3	9	0.0071	0.52	12.3	2.6	1	23	286	308	286	308	0.98
4	9	0.00019	0.014	17.3	3.4	2	23	316	337	315	337	0.96
5	9	0.0034	0.24	13.4	8.1	1	21	350	370	350	371	0.93
6	9	2e-06	0.00014	23.5	2.4	1	23	381	404	381	404	0.97
7	9	2e-06	0.00015	23.5	0.4	1	23	436	458	436	458	0.98
8	9	1.7e-05	0.0012	20.6	0.2	1	23	464	486	464	486	0.98
9	9	9.9e-05	0.0072	18.2	1.2	1	23	492	514	492	514	0.97

Sequence Information

Coding Sequence: ATGAGTTTAATTAGGTCTGAAATTATAAATGCTAGTAATATCAAGAAAATCTGTAGAATTTGTTTGGAACAGAAAACTAACctactttcattatttactAACTTACAATTTGAAGAAGAAAATATAGTATCCATAAGTATTCCAGATATTCTGGTACATTTAACTTCAgaaataatccAAAATGAAAATAGCCTTCCAGTGCAAATATGTCTACAATGTGTGGGTTTATTAAAATCTGCTTacatattcaaattaaaatttgaggaGTCGTCTGGAATTTTACGAAGATATCTGTCTACTATTATtgaacaaaaacagtttttgtcTGTAGGAAGTGATTCTAACAATGACAATAATTcagattttgaaaatgaattatGCGAAGAGAAAAATAGTAAAACTACAAATGAACAAGAACATAATTTTAAGCagatcaaaaatataaattataaaagaaataatattgaatatggAAATACAGATTCTGAAGTAGAGTATTCAACAGAAACATCATGTTTCTATCCTTGTCCTATATGCACTATGGAGATGCCAGCCAAGGAATTAAAACTACATGCTCACAGTCAtaaagcattaaaaaaatatttaaacattccAAAAGTAAAGGAAGACACAAAATTCTATGCAATTTCACGAACTACTACTTCACTTTATAatcaaacagaaattttacacaaatgccCATTTTGCAACAAAGATTACTCAGCACAACAATTTAGAGTTCATGTAGATAATCATAGAAAAGAAGATGAATTTAAATGTGATAACTGTGATAGAGTTTTTAGGAAATTGAACCATTTAAATACTCATCGAGTAAAACATTTAAAGGAATGTCCATATAAATGTGATCagtgtggaaagggatttgtaattaaaaaaaattatgactgCCATATGTTGACACATACAAATAATGAATTGCCTCTTGAATGCACCTTTTGTTTAAAAAGATTTTCTAACCCTGAACATCTTCATCGGCACCAAATTATTCACACTGAAAATGTATCATACTCCGAAAAGTATAAAGTTTGCAAATGTCATCACTGTTTAAAAACCTTTAAGGATAAGGAGACTTTAAAAAGTCATATATGTGTGCCAGTTGAACAAGCAGTTAATACAAAATATCCCTGCAAAACATGTGACAAAGTTTTTAAACATTCTAGTGGACTGTATAATCACATTAGAAATAATCACAAACTTAAAAGTACAAAAACGTTATGTTCTGTCTGTGGGGGTTATGTTTCCAATATTTACAACCATATGATGAGACATACAGGAGAGAAGCCGTACCCTTGTAACCAATGTGATAAACGATTCGCATCTAAACCTCAGCTAAAGCAGCATTTATTAGTTCACTCTGGACTCAAACCATTTGTATGTAGTGTATGTGCAAAAGCTTTTAATAATCTGTACAATTTGCAAGTACATGAGAGGATACATAAAGGTGATCGATGCCACATTTGCCCTGTATGCAACAAaggatttttggaaaaatcatatttaaaaaaacatatgaatgtacataaaaatattaattag
Protein Sequence: MSLIRSEIINASNIKKICRICLEQKTNLLSLFTNLQFEEENIVSISIPDILVHLTSEIIQNENSLPVQICLQCVGLLKSAYIFKLKFEESSGILRRYLSTIIEQKQFLSVGSDSNNDNNSDFENELCEEKNSKTTNEQEHNFKQIKNINYKRNNIEYGNTDSEVEYSTETSCFYPCPICTMEMPAKELKLHAHSHKALKKYLNIPKVKEDTKFYAISRTTTSLYNQTEILHKCPFCNKDYSAQQFRVHVDNHRKEDEFKCDNCDRVFRKLNHLNTHRVKHLKECPYKCDQCGKGFVIKKNYDCHMLTHTNNELPLECTFCLKRFSNPEHLHRHQIIHTENVSYSEKYKVCKCHHCLKTFKDKETLKSHICVPVEQAVNTKYPCKTCDKVFKHSSGLYNHIRNNHKLKSTKTLCSVCGGYVSNIYNHMMRHTGEKPYPCNQCDKRFASKPQLKQHLLVHSGLKPFVCSVCAKAFNNLYNLQVHERIHKGDRCHICPVCNKGFLEKSYLKKHMNVHKNIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110852;
90% Identity: -
80% Identity: -