Malt042829.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:43662784-43666945[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00023 0.017 17.0 2.6 1 23 180 202 180 202 0.98
2 17 0.085 6.1 9.0 6.3 1 23 211 233 211 233 0.99
3 17 0.0071 0.52 12.3 2.8 1 23 238 260 238 260 0.99
4 17 0.0049 0.35 12.9 6.8 1 23 269 291 269 291 0.99
5 17 0.025 1.8 10.6 2.1 1 23 300 322 300 322 0.98
6 17 0.008 0.58 12.2 2.8 1 23 330 352 330 352 0.99
7 17 0.061 4.4 9.4 1.0 1 23 361 383 361 383 0.98
8 17 0.0018 0.13 14.2 0.7 1 23 392 414 392 414 0.98
9 17 0.0013 0.095 14.7 2.8 1 23 423 445 423 445 0.98
10 17 0.0024 0.18 13.8 2.0 1 23 454 476 454 476 0.98
11 17 9.3e-05 0.0068 18.3 1.8 1 23 485 507 485 507 0.98
12 17 1.9 1.4e+02 4.7 4.2 1 23 516 538 516 538 0.96
13 17 0.0039 0.28 13.2 0.7 1 23 546 568 546 568 0.98
14 17 0.029 2.1 10.4 4.7 1 23 576 598 576 598 0.98
15 17 0.0032 0.23 13.4 3.9 1 23 606 628 606 628 0.98
16 17 0.0052 0.38 12.8 2.5 1 23 637 659 637 659 0.98
17 17 9.4 6.8e+02 2.5 2.8 1 23 668 690 668 690 0.94

Sequence Information

Coding Sequence
ATGGATATTGAGGATACTATTTTGCCTTATATGAAGTCCGAAAATGGAGCACCCATGGACTTGAAACAAATCGATGTAGAGGAAAGAAAAGAACATTTAAAAGACGTATTAGAACATCAGAGAATATGTCGACTTTGTATGCAAGTAGTCACCCGCGATTTTACACAGTTACAAGAAGTAGATGGTGACACGCTTCGTAAATATCTTCCCCAAGGCGACTTTAGTTCCACCGAAGAAGTTATATGCAAGACTTGTTTGTATTCGCTGGACACGCAAACGAATTTTTTAACTAACATTGTGAATGTAAAGGAAGAAATTGGCGATATTTGTGATAATCAGGTCATAGAAGATGTGTTGAATATTAAGTCTGAAGAACTTGAAATCAAATCGGAAGAGAATTATGCGGACATCCCCAATTGGAATGTGAAAGATGAAGCTCTCGATTGTACCTGCAAACCTGAGTATGTAACAATATCAAATAATCCTACACTTAAGCGAAAAAGCAAGCAACAAGGAGTTTCACCTGTAGGGGAGACAtataaatgtgatttttgtGACTATACCACTGATCAAACGAGGAATCTTAGACGACATCAGCTTAGCCACAGAAACGTCCCAGATTATAAGATGTACAAATGTAAATCATGTGACTATAAATCTAAACGAAGGGACTGTTTCGTGCAACATCAGCTCAGACATAATGGACAAACATACGAATGTACCGTTTGTAACTATAAAACCGTTTACAAGAACTGCCTAGCACAGCACCAGCTAACGCACGAGACCATTCCCAAAGATCAGATGTTTAAATGCGACTTCTGCACTTATACAACAATTTACAGGAGCTGCCTTACCCGGCACCGCCGGACTCACAAAGAAGCCCCGGAGGATCAGATGTATCGATGCGTTTTATGCAGTTATAAAACTACGAGGGAATACTATCTCGTACAACATCGGCTGAGACACGACATCCCCAAACAGcagatgtacaaatgtgatacgTGTGATTATGAGACTGATCGGAAGTTGTACTATACGCGACATCAACTGAAACATAAAGACGTGCCTGAGGAACAGACCTTCAAATGCGCCTCTTGCGAGTATAAAACCAATCAGAAAAGACTTCTTGCGAGTCACGTGCTAAGACATAAGAATGTCCTTGAAAAGCAAATGTTTACATGTAATCTGTGTGATTACAAAAGTGCTTATAAGAGCGGTCTGGTGCAACATCTGCTTAAACATCCAGATGTCTCTAAAGCGCAGATGTATACCTGCGATTCCTGCAATTACACAACCATTTATAAGAGCTCTTTTACGCGACATCAACTAAGCCACAAAAAAAACCCGATAAAACAGACATAtcaatgtgatttgtgtgattataaaacgaaGCGAGCGTTTCGTCTTACACAACATTTGCTCAAACATACAGACATGCCGAAAGAGCAGACGTTTAAATGTGACGTGTGCGGTTATGAAACTAGACAAAAGGCGTATTTTAACCGGCATCAGCTAAAACATCAAGAAATCCCTGAAGAACAGATGTATCGATGCAACACCTGCAACTACAAAACCGGTCGGAAGAGACTTCTTGTATGTCACCTGCTAAGACACAAAAACATCCCGGAGCAGATGTATCAGTGTGATTCGTGTGATTATAACACAATTTATAGGAGCAGTCTAGCGCAACATCAACTACAACACAAAGACATCGAGAAACAGATGTATCACTGCGATTCTTGCGATTACCAAACTGATCAGAAGAGATCCTTTACACGACATCAACTAACGCACAAAGACGTTCCGGAAGGGCAGTATAAGTGTAACGTGTGCAGTTTCGAGACCGTTCATAAGAGCAGTCTTAGACAGCATAGACTGAGGCACAAAGACATGTCTGAAGAGCAGATGTTTAAATGcgatttgtgtgattataagGCGAGTCAGAAGAGGTACCTCACGAGTCACAAGTTAAGGCACAAAGTGATTCCGGACGAACAGATGTTTAAATGTGGTTTGTGTGGTTTTAAATCTATTTGTAAGAAAAGTGCCATACGACATCAGCTGAGACACAACGACTTCGCTGAGAAGCAGATAAATGATAAAACTGGTTGA
Protein Sequence
MDIEDTILPYMKSENGAPMDLKQIDVEERKEHLKDVLEHQRICRLCMQVVTRDFTQLQEVDGDTLRKYLPQGDFSSTEEVICKTCLYSLDTQTNFLTNIVNVKEEIGDICDNQVIEDVLNIKSEELEIKSEENYADIPNWNVKDEALDCTCKPEYVTISNNPTLKRKSKQQGVSPVGETYKCDFCDYTTDQTRNLRRHQLSHRNVPDYKMYKCKSCDYKSKRRDCFVQHQLRHNGQTYECTVCNYKTVYKNCLAQHQLTHETIPKDQMFKCDFCTYTTIYRSCLTRHRRTHKEAPEDQMYRCVLCSYKTTREYYLVQHRLRHDIPKQQMYKCDTCDYETDRKLYYTRHQLKHKDVPEEQTFKCASCEYKTNQKRLLASHVLRHKNVLEKQMFTCNLCDYKSAYKSGLVQHLLKHPDVSKAQMYTCDSCNYTTIYKSSFTRHQLSHKKNPIKQTYQCDLCDYKTKRAFRLTQHLLKHTDMPKEQTFKCDVCGYETRQKAYFNRHQLKHQEIPEEQMYRCNTCNYKTGRKRLLVCHLLRHKNIPEQMYQCDSCDYNTIYRSSLAQHQLQHKDIEKQMYHCDSCDYQTDQKRSFTRHQLTHKDVPEGQYKCNVCSFETVHKSSLRQHRLRHKDMSEEQMFKCDLCDYKASQKRYLTSHKLRHKVIPDEQMFKCGLCGFKSICKKSAIRHQLRHNDFAEKQINDKTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-