Malt042286.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:38409077-38413326[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0006 0.043 15.7 1.4 1 23 297 319 297 319 0.98
2 15 0.0086 0.62 12.1 6.8 1 23 328 350 328 350 0.98
3 15 0.092 6.6 8.8 1.4 1 23 359 381 359 381 0.99
4 15 0.00044 0.032 16.2 1.1 1 23 390 412 390 412 0.98
5 15 0.013 0.91 11.6 1.2 1 23 421 443 421 443 0.99
6 15 0.11 8.1 8.6 4.4 1 23 452 474 452 474 0.96
7 15 0.00077 0.056 15.4 3.2 1 23 483 505 483 505 0.99
8 15 0.0031 0.22 13.5 1.3 1 23 514 536 514 536 0.96
9 15 0.008 0.58 12.2 5.6 1 23 607 629 607 629 0.99
10 15 0.00031 0.022 16.6 0.7 1 23 638 660 638 660 0.99
11 15 0.002 0.14 14.1 3.2 1 23 669 691 669 691 0.99
12 15 0.0011 0.078 14.9 1.7 1 23 700 722 700 722 0.98
13 15 0.04 2.9 10.0 5.8 1 23 731 753 731 753 0.98
14 15 8.3e-06 0.0006 21.6 3.4 1 23 762 784 762 784 0.99
15 15 0.0041 0.3 13.1 4.0 1 23 793 815 793 815 0.98

Sequence Information

Coding Sequence
ATGCAATCAGAATACttgaacaacaaaatattttgcagacTGTGTCTTTACACTATAAGCTATTCAAATTCCGAAGTAATAGAAAAAGTCACAAGGGAGGTTTTAGAAGCTGTTTTACCTAATCTGATTTTGGAAGAAGGACATAAACATCTTACGTGCAAGGCatgtaattcaaaattatttgccgCTTTCAATTTTAAGGCCAGATGTATGGGTACTGAAGATATTATTTCTTCATACCTCAATTGCAGTAAAGTGTCACCGATTGATTTAAAAGAGGTTTATTTAATGGTTAACGGAAATTATCAGTTGACTGATACATGGGAAAATCAGAAAATTTGCCGATTATGCATTCAACTGGTAACATATAAATTCGTGCCACTAAATGAAATGGATATTGACATAATAAATGTCTACATACCTCAGATAaaCATCGGTGCTACTAATGACCCTATTATATGCGGATCATGTTTTGATTCTCTTCATACACATGTAGGGTTTTTAAAGAACTGCCTGGAAGCACAGGAAAGATACAAAAATGTCGATAAACAGCCATATATAAAAACCGAAGAGATTAAAATGGAAGATTTTCAGGATTTACAAGAATATGAAAacaatacatatattaaatCCGGAGAGATGGAAATAAAGTTAGAGCAAGGAGATCAAGATAAcgaTTCTACTTCGCACAGTTTATATAAGGAAACTGAAAACGTAATGAACGAAATTTTTGGAGTTGTAGAGGAAACAATGTATAAATGTACCCTTAACTGTGAAACTGAAGTTCAAGTACACAAATGCCAAACTCCCTTAGATGTGAGAGAGTTTGAAGGTGATGTGCACCATAAAAGCGTTCCAAAACGGAAGTTTCCTTCaaaaatccaaatgtacaagtgtgataccTGTGgttatgaaactaaatataagaaTGCTTTAAAAACCCATCAGTTATtgcacaaagacccttctgaagTCCATATGCACAAGTGTGACACTTGTACTTacgaaactaaatataaaagcCACCTGAAGGATCATCAGTTAACACACAAAAATtcttctgaaatccaaatgtacagatGTAATATGTGTGCTTTTGAAGCTAAACGTAAGTTTGTTCTGAAAAATCATCAATTAACCCACAGGAAtccttctgaaatccaaatgtacaagtgcGATAAATGTGATTATGAAAATAAACGTGCCAGTGAGCTGCAGCGTCATCAATTATCACATAAAGACCTTTCAGAAATTCAAACGTTCAAGTGTAATGCATGCAGTTTTGAAACTAAACGAAAGGGCGATCTTAGCATGCATCAATTAACACACAGAGATCCTTCAGAAATTGAAATGCACAAATGTGATATTTGTACTTTTGAATCCAAatataagagaaatttaaaaagtcaCAAATTATTGCACAAAAACCCTTCCGAAGTCCGTATGTTCAAGTGTAGTATTTGTAGTTATGAAAGTAGATACAAAAAGCAGCTGAAAAATCATCAGttaacacacaaagacccttccGAAATCCAGATATACAGATGTGATGAATGTGATTACGAAACTACACTCAAATACGAGCTGAAAAGTCATCAGTTTCTGCACAAATACCCTTCCAAAATCAATACGTACAAGTGTGATGCTTGTACTTACGAAACTAAATGTAAAAGTTGCCTAAATAATCATCAGTTAATGCACGAAGACTCTTCTGAAATTCAAATGTCTATGTGTGATACTTGCACTTATGAAACTCAATATAAGAGTCACCagaaaaatgattatttaacaCACAAGAATacttctgaaatccaaatgtacaaatgtgataatTGTActtttgaaactaaatataagaaTCACCTGAAAAATCATCAGTTGACACACAAAGATCCTTCTGAAATCCAGATGTACAGATGTGATGTATGTGACTATGAAGCTAAGCGTAAGGATGTTTTGAAAAAACATCAGTTAACGCACAAGAACCCTTCAGAAATCCAAATGTATAAGTGCGATAGATGTGACTATGAAAGTAAACGTTCGGGTGAGCTGCACCGTCATAAAttaacacacaaagacccttctgaagTCCAGATGTACAAATGTAATGTGTGtaattatgaaactaaatataagaaTGCTCTAAAAACTCATCAGTTGTTGCACAAAAACCCAGGTGAAATCCGTATGTACACGTGTGATACTTGTActtataaaactaaatataaatgcCAACTGAAAAGTCATCAGTTAATACACAAAAACCCTTCAGAAATCCAGATGTTCAGGTGTGATGAATGTGGTTACGAATGTAAACGCAAATCTGAGTTAAAAAGTCATCAGttaacacacaaagacccttctgaaatccaaatgtacaaatgtaacactTGTAATTACGAAACTAGATATAGGAAAAGTTTGAAGAAACATAAATTAATACACAAAAaccatttataa
Protein Sequence
MQSEYLNNKIFCRLCLYTISYSNSEVIEKVTREVLEAVLPNLILEEGHKHLTCKACNSKLFAAFNFKARCMGTEDIISSYLNCSKVSPIDLKEVYLMVNGNYQLTDTWENQKICRLCIQLVTYKFVPLNEMDIDIINVYIPQINIGATNDPIICGSCFDSLHTHVGFLKNCLEAQERYKNVDKQPYIKTEEIKMEDFQDLQEYENNTYIKSGEMEIKLEQGDQDNDSTSHSLYKETENVMNEIFGVVEETMYKCTLNCETEVQVHKCQTPLDVREFEGDVHHKSVPKRKFPSKIQMYKCDTCGYETKYKNALKTHQLLHKDPSEVHMHKCDTCTYETKYKSHLKDHQLTHKNSSEIQMYRCNMCAFEAKRKFVLKNHQLTHRNPSEIQMYKCDKCDYENKRASELQRHQLSHKDLSEIQTFKCNACSFETKRKGDLSMHQLTHRDPSEIEMHKCDICTFESKYKRNLKSHKLLHKNPSEVRMFKCSICSYESRYKKQLKNHQLTHKDPSEIQIYRCDECDYETTLKYELKSHQFLHKYPSKINTYKCDACTYETKCKSCLNNHQLMHEDSSEIQMSMCDTCTYETQYKSHQKNDYLTHKNTSEIQMYKCDNCTFETKYKNHLKNHQLTHKDPSEIQMYRCDVCDYEAKRKDVLKKHQLTHKNPSEIQMYKCDRCDYESKRSGELHRHKLTHKDPSEVQMYKCNVCNYETKYKNALKTHQLLHKNPGEIRMYTCDTCTYKTKYKCQLKSHQLIHKNPSEIQMFRCDECGYECKRKSELKSHQLTHKDPSEIQMYKCNTCNYETRYRKSLKKHKLIHKNHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-