Malt042336.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:38867709-38877729[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.7e-05 0.0034 19.2 1.9 1 23 348 370 348 370 0.99 2 11 0.038 2.8 10.0 3.5 1 23 379 401 379 401 0.98 3 11 0.00068 0.049 15.6 1.8 1 23 410 432 410 432 0.99 4 11 3e-05 0.0022 19.8 2.0 1 23 441 463 441 463 0.99 5 11 4.1e-05 0.003 19.4 1.3 1 23 472 494 472 494 0.97 6 11 0.00083 0.06 15.3 5.6 1 23 503 525 503 525 0.99 7 11 0.0024 0.18 13.8 0.6 1 23 534 556 534 556 0.97 8 11 0.051 3.7 9.7 5.5 1 23 565 587 565 587 0.98 9 11 0.0019 0.14 14.1 1.5 1 23 596 618 596 618 0.99 10 11 0.012 0.85 11.7 3.6 1 23 627 649 627 649 0.99 11 11 0.00017 0.013 17.4 0.7 1 23 658 680 658 680 0.99
Sequence Information
- Coding Sequence
- ATGCAGCCAGAAAACTTTAATAACACATTTCTTTGCAAACTTTGTGTTAATGCCATAAGCTGTACAAATTCCGAAATAATAGAAGAAGTTACAAAGGAAATTTTAGAAACGGTTTTGCCAAATCTGaatttggAAGAGGGACATGAATACCGTATGTGTACAGCATGCCGCTCAAAATTGTTTcttgcttttaattttaaatcggCGTGTATGGGAACTGAAGATCTTTTGATCTCTTATGTTACGACCAATAAAGTGTCAGAGATTGACTTGAAAGAAATTTACCTAATGGTCAATGGAAATATTCAGTTAACTGATATATTGAAAGATCAGAAAATTTGTCGATTGTGTCTTCAATTGGTAACAAACGGATTTGTGTCACTAAATGAAGTGGATAATGGCACAATTAATGCATATATACCTCAAGTAAAGATCAGTGCTACCAATGACCCTGTCATATGTGGGCCATGTTTCGATTCGCTTTGTACCCATGGTGGTTTTGTAAAGAACTGCCTCGAAGCACAACAAAAAGGCGAAAGTACCGGTCATATTAAGTTTGAACAGATTGAAATTAAACAGGAAGCTGGCCATAATTTACAGCAGACATATAAACCTATTGATAAACAGTGCAATATTACAAGTGAAAAGATTGAAATAAAACTGGAAGCTGATCAAGATGCGCAAGAggaatataaaaacattgataaaccgtcttatattaaatttgaaagcGTTAAAATTAAGCTGGAAGATGGTCAAGATGTTCAGGAGGAATATATAAACACTGATaggcaaaattatattaaacctgAAGAGATAGATATAAAGATAGAGGCAGGAGATCAAGATAAtaattccTCTTGGCATATTTCCGAAGATATAAGAGAAACGAAAGATGAGTGTGAGACCAAATTTCTAATAAACCCATGTGAAACTCCTCTAAATATATTATCACATCAAAATGGATATAAAAGAACGTTTGAAGGTGATTTAAAACACAATATTGTTCCCAAACTGCAACACTCTTCGGATATcaaaatgtacaagtgtgacaTATGTACTTATGAAACCAAACGTAAGAGAAACCTGATAACTCATCAGttaacacacaaagacccttctgagATCCAGATGTTCAAGTGCGATGAATGTGATTACGAAAGTAAACGTAAGGGTGAGCTGAAATGTCATAAATTAACACACAGGGATCCATCTGAAATcgaaatgtacaaatgtgatatttGTACTTATGAGACTAAATATAAGAAAGGTTTGAAAGATCATCAATTAACGCACAAGGATCCTTCCGAAATCCACATGTACAAGTGTGATGTATGTACTTACGAAACTAAACGTAAAAGTGACTTGAAAAGTCATcaattaacacacaaagacccttccGAAATCCAAATATATGTGTGCGATACATGTGGGTATCAAACTAAACGAAAGAGTAATCTTACTATACATCAGTTATTCCATAAAGATCCTTCTGGAacccaaatgtacaaatgtaatACTTGTACTTATGAAACCAAATATAAGAGTCACCTGAAAGATCACCAGTTAACACACAAAGACCcatctgaaatccaaatgtacatgTGTGATGCATGTGATTATCAAACTAAACGTAAGGGCGATCTGAAAAGTCATCAATTATTACACGAAGACCCTTCTAAAATTCAAATGTATATGTGCGATACATGTTcttatgaaactaaatataagagACACTTGAAATATCATCAATTAAGACATAAAGACCGTTCTGAAATTGAGACGTACAAGTGTGATCAATGTGATTATGAAAGCATACGTAAGAATGAGATGAAAAATCACCGATTgacacacaaagacccttctgagatccaaatgtacaaatgtgacatatgcccttatgaaactaaatataagagATGTTTAAAGGGTCATCAATTGAaacacaaagacccttctgaaatccaaatgttcAAGTGTGATGTCTGTGAATATGAAGCTAAACGTAAGGGTGACCTGAAAAGTCATCAGCAAACACACAAACgttctgaaatccaaatgtag
- Protein Sequence
- MQPENFNNTFLCKLCVNAISCTNSEIIEEVTKEILETVLPNLNLEEGHEYRMCTACRSKLFLAFNFKSACMGTEDLLISYVTTNKVSEIDLKEIYLMVNGNIQLTDILKDQKICRLCLQLVTNGFVSLNEVDNGTINAYIPQVKISATNDPVICGPCFDSLCTHGGFVKNCLEAQQKGESTGHIKFEQIEIKQEAGHNLQQTYKPIDKQCNITSEKIEIKLEADQDAQEEYKNIDKPSYIKFESVKIKLEDGQDVQEEYINTDRQNYIKPEEIDIKIEAGDQDNNSSWHISEDIRETKDECETKFLINPCETPLNILSHQNGYKRTFEGDLKHNIVPKLQHSSDIKMYKCDICTYETKRKRNLITHQLTHKDPSEIQMFKCDECDYESKRKGELKCHKLTHRDPSEIEMYKCDICTYETKYKKGLKDHQLTHKDPSEIHMYKCDVCTYETKRKSDLKSHQLTHKDPSEIQIYVCDTCGYQTKRKSNLTIHQLFHKDPSGTQMYKCNTCTYETKYKSHLKDHQLTHKDPSEIQMYMCDACDYQTKRKGDLKSHQLLHEDPSKIQMYMCDTCSYETKYKRHLKYHQLRHKDRSEIETYKCDQCDYESIRKNEMKNHRLTHKDPSEIQMYKCDICPYETKYKRCLKGHQLKHKDPSEIQMFKCDVCEYEAKRKGDLKSHQQTHKRSEIQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -